BAC Information

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BAC

Clone NameMSMg01-446I20
Chromosome2 (Build37)
Map Location 141,758,885 - 141,759,450
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446I20.T7 (MSMg01no446_i20.b1)MSMg01-446I20.TJ (MSMg01no446_i20.g1)
ACCAG535219AG535220
length741732
length of high quality
(start - end)
566 (65 - 630)525 (65 - 589)
definitionCHROMAT_FILE: MSMg01no446_i20.b1 PHD_FILE: MSMg01no446_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:06 2005CHROMAT_FILE: MSMg01no446_i20.g1 PHD_FILE: MSMg01no446_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGCAATACGACTCACTAATTTCAGAGGAGGGCGGAATTCTTTTCACATG
ACGAAAAAATTCTTCATTGTCCCTTTTATTCAACATTCATGGGACTAGCT
GAAGATTAACACAAGTGGCTGTATCATACTAGGAATTTTAACATACATTT
CTCCTCAATTCANAGGTGGGTCTATTGAGCATTTCCGGGGCAACCTGAGT
AATTGCCCATTGATGTCTCACACTACCATTTTCCTGACCTCTTTCTTTTT
ACTGGACAATGTCTTGAAGTTTTAGAGCACTATGACTCAGAAGAGATAGG
ACTTATTGTAATATTATATATAAACTCACTGTTTTAGAGGCCTTTAGTAC
AAGAGCCTGTTTTATAGAATGAGTTCTTTCTGGAGGCCCTAAGAGAGCAT
CTCCTCTAAACCTTGCTTCTAGGTTCTAGTGCTTCTAGGTAACTGATATA
ATCTCTCAGTCCATGGCTATGTAACTCCTATCTCTCCTTAAAGTTCTCTG
TTATTTCTATTTTCAAGTCTCTTTATAAAGACATTTAGTATTGCATTTAA
TCTAGAATGACCTCATTTTTTTAATGCTCAGCTAAATGATATATGCAAGG
ATCTATTTTCTAAATATAGTTATATTGGGAATGTCATTCAACTTACTATA
GATATTCCTTGCTGTCCTCAAATCTTCAAGTCTTCAATTCTGCCTTGCCT
TGAGCTTATGAGTGATTCACTGTGCTTGGTTTTGGATTTTG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTAACTGGAGGAATACTGGATGGCTGAGAAGCATTTG
ANAAAATGTTAAGCATCCTTAATAATCAGGGAAATGCAAATCAAAATAAC
CCTGAGATTCCATCTCACACTAGCCAGAATGGCTAAGATGAAAAATTCAG
GTGACAGCAGATGCTGGCTAGGATGCGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTAGGATTGCAAGGTTGTACAACCACTCTGGAAATCAGTCTGGTG
GTTCCTCATATTTTGTACATAGTACTACTGGAGGATCCTGCAATACGTCT
CCTGGGCATATATCCAGAAGATGTTCAAACCTGTAAGAAGGACACATGCT
CAACTATGTTCATAGCAGCCTTATTTGTAATAGCCAAAAGCTGGACAGAA
CCCAGTTGCCCCTCAACAGAGGAATGGATACAGAAAATATGGTACATTTA
CACAATGAAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCC
TAGGCAAATGGATTGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAA
TCACAAAAGAACTCACATGATATGTACTCATTGATAAGTGGATATTATTC
CAGAAACTTAGAATAACCCAGATACAATCTGCCTAACACCAGATACTCCT
GAACGAAGATGAAAGTGTGGACCCTTTGCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_i20.b1 MSMg01no446_i20.b1 CHROMAT_FILE:
MSMg01no446_i20.b1 PHD_FILE: MSMg01no446_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:06 2005
         (566 letters)



>mm_chr2_141758685_141759650
          Length = 966

 Score = 1004 bits (519), Expect = 0.0
 Identities = 554/566 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattgtcccttttattcaacattcatgggactagctgaagattaacacaagtggctgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 cattgtcccttttattcaacattcatgggactagctgaagattaaaacaagtggctgtat 260

                                                                       
Query: 61  catactaggaattttaacatacatttctcctcaattcanaggtgggtctattgagcattt 120
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 261 catactaggaattttaacatacatttctcctcaattcaaagatgggtctattgagcattt 320

                                                                       
Query: 121 ccggggcaacctgagtaattgcccattgatgtctcacactaccattttcctgacctcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccggggcaacctgagtaattgcccattgatgtctcacactaccattttcctgacctcttt 380

                                                                       
Query: 181 ctttttactggacaatgtcttgaagttttagagcactatgactcagaagagataggactt 240
           |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 381 ctttttactggacaatgtcttgaatttttagagcaccatgactcagaagagataggactt 440

                                                                       
Query: 241 attgtaatattatatataaactcactgttttagaggcctttagtacaagagcctgtttta 300
           |  | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggaaataaaatatataaactcactgttttagaggcctttagtacaagagcctgtttta 500

                                                                       
Query: 301 tagaatgagttctttctggaggccctaagagagcatctcctctaaaccttgcttctaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagaatgagttctttctggaggccctaagagagcatctcctctaaaccttgcttctaggt 560

                                                                       
Query: 361 tctagtgcttctaggtaactgatataatctctcagtccatggctatgtaactcctatctc 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 tctagtgcttctaggtaactgatataatctctcagtccgtggctatgtaactcctatctc 620

                                                                       
Query: 421 tccttaaagttctctgttatttctattttcaagtctctttataaagacatttagtattgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccttaaagttctctgttatttctattttcaagtctctttataaagacatttagtattgc 680

                                                                       
Query: 481 atttaatctagaatgacctcatttttttaatgctcagctaaatgatatatgcaaggatct 540
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttaatctagaatgagctcatttttttaatgctcagctaaatgatatatgcaaggatct 740

                                     
Query: 541 attttctaaatatagttatattggga 566
           ||||||||||||||||||||||||||
Sbjct: 741 attttctaaatatagttatattggga 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)