BAC Information

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BAC

Clone NameMSMg01-446O14
Chromosome2 (Build37)
Map Location 164,255,684 - 164,256,126
singlet/doubletsinglet
Overlap geneSdc4
Upstream geneGdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl
Downstream gene2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446O14.T7 (MSMg01no446_o14.b1)MSMg01-446O14.TJ (MSMg01no446_o14.g1)
ACCAG535493AG535494
length733747
length of high quality
(start - end)
258 (315 - 572)448 (63 - 510)
definitionCHROMAT_FILE: MSMg01no446_o14.b1 PHD_FILE: MSMg01no446_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:34 2005CHROMAT_FILE: MSMg01no446_o14.g1 PHD_FILE: MSMg01no446_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGCTC
TTACGTGTATCTCATTGTTAAATTGGCTTATTTACTTTCTTGGTGTCCAG
TTTTGTGGGGCTTTTCGGTTGTTGTTATTGTTCTTTCTGTATTTTGAGTA
CTAGCCCTCTCTCGGATGCTGCTTTGTCTGAATGATGGCGACCTCTGCCA
CTCAGAAGCTTTCCAGTTTCACAAGGTCCCATTTATTAATTGCTGCTCTT
CGTGCCAGTGCTGTTGGTGTCTTGTTTAGAAAGTCTTTTCCTGTGCCAAT
GAGTTCTTTATATGTCCCACTTTCTCTTCTATCAGATTCAGTGTGTTTAA
TCTTATGCTGAGGCCCCTGATCCATTTGGAGTTGAGTTTGGTGCAGGGTG
AGAACTCTGGAGCTGCTTGCATTCTTTTCTACAGCAGCTATCCAGCCTGA
GCAGCACTGTTTGTTGTTGAAAATGTTGTCTTGTTTTTTTCTACTGTGTG
TTTTGGTTTCCTTATCAAAAACAAGGTATCCATAGGTATATGGACTTATT
TCTGGACTTTTGATTTGATTCCATTGATCAATGTGTCCATTTTTATGCCA
ATACCTTGCTGTTTTTATTACTATAGCTCTGCACTACAATTTTTTTTTTT
TTTTGGTGATACCTCCTAGCAATTTTTCCAATTTCCGTATTTTTAAAATT
GCTTTTATTGCTCCTTTTGTGTTCTCCTTATGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTCAGAAATTCCAGCGCTGCCTTCTACTTAGAGCCTTGGTTCTTACTAT
GTAAATCGAGGGTCTGGAGGACTGTGGAGTCAGTTGTGGACTGAAGCGAG
TTCCAGCTCTTAGCAGTTACCGTGCACTCCGTATTTTTAGAAGTAAATTT
TGTATACCGTGTATCCCGAGTATACTGTGGTGTATTAGGACAGCCTCTAC
AAAGGGTTGCAGCCAGGAGACAAGCTAAACTCTTTGCCTCCTGTGTTTAT
CATTACAGTTTTTTGCTTCCTTCCCAAAAGGTAATTCCCTGGGGAGCTTG
TTCAGATGTAAATTTTAGTTAATTAAGGTGGCGCTATCTTCCCTGATAGA
GATTGAGCCTATGGCTTGGCTCTGCCACTGACCTACTCCCCCCCCCCCCC
TTTTTTTTTCTTCTTTGAGACAGGGTTTCTCTGTGCAGCCCTGGCTGTCC
TGGAACTCACTCTGTATACCAGGCTGGTCTTGAACTCAAATCCGCCTGCC
TCTGCCTCTCGAGTGCTGGGATTAAAGGCAAGCGCCCCTACCTTGCCTCT
CCTTAACTTTCATGTTTGACACCAGTTCTTCCTGCGCGGACCACGCTGCT
TTTTAAACTTGCTCTCCGGGTGCCTGGGATTTTCGACGAGTGTCCACCTC
TTTCATCTAAATTTTTGTTTCTTTCTATACTACCCCCACTATTTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_o14.g1 MSMg01no446_o14.g1 CHROMAT_FILE:
MSMg01no446_o14.g1 PHD_FILE: MSMg01no446_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:34 2005
         (448 letters)



>mm_chr2_164255542_164256388
          Length = 847

 Score =  762 bits (394), Expect = 0.0
 Identities = 433/448 (96%), Gaps = 5/448 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcgctgccttctacttagagccttggttcttactatgtaaatcgagggtctggaggac 60
           ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 585 cagcgctgccttctacttagagccttggttcttactatgtaaaacgagggactggaggac 526

                                                                       
Query: 61  tgtggagtcagttgtggactgaagcgagttccagctcttagcagttaccgtgcactccgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 525 tgtggagtcagttgtggactgaagcgagttccagctcttagcagttaccatgcactcggt 466

                                                                       
Query: 121 atttttagaagtaaattttgtataccgtgtatcccgagtatactgtggtgtattaggaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 465 atttttagaagtaaattttgtataccgtgtatcccgagtatactgtggtgtactaggaca 406

                                                                       
Query: 181 gcctctacaaagggttgcagccaggagacaagctaaactctttgcctcctgtgtttatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gcctctacaaagggttgcagccaggagacaagctaaactctttgcctcctgtgtttatca 346

                                                                       
Query: 241 ttacagttttttgcttccttcccaaaaggtaattccctggggagcttgttcagatgtaaa 300
           ||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 345 ttacagttaactgcttccttcccaaaagttaattccctggggagcttgttcagatgtaaa 286

                                                                       
Query: 301 ttttagttaattaaggtggcgctatcttccctgatagagattgagcctatggcttggctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ttttagttaattaaggtggcgctatcttccctgatagagattgagcctatggcttggctc 226

                                                                       
Query: 361 tgccactgacctactccccccccccccctttttttttcttctttgagacagggtttctct 420
           |||||||||||||   ||||||||||||  ||||||||||||| ||||||||||||||||
Sbjct: 225 tgccactgaccta---cccccccccccc--tttttttcttcttcgagacagggtttctct 171

                                       
Query: 421 gtgcagccctggctgtcctggaactcac 448
           ||||||||||||||||||||||||||||
Sbjct: 170 gtgcagccctggctgtcctggaactcac 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 847
Length adjustment: 10
Effective length of query: 438
Effective length of database: 837
Effective search space:   366606
Effective search space used:   366606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)