XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGGCCCTTACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCA
ACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCGACTAAAATCAAGG
AATAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTAATTGA
AGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATGAAGGGGATACAAA
TTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTA
TATATAAGTGACCCTATTTTTTCTACCAGAGAACTCCTAAACCTGATAAA
CTGCTTCAGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGG
CCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACA
ACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTCT
AACTAAGGAAGTGAAAGATTTGTATGATAAAAACTTCAAATCTCTGAAGA
AAGAAACTAAAGAAGATCTCCGAAGATGGAAAGATCTCCCATGCTCATGG
ATTGGTAAGATCAACATTGTAAAAATGGTTATCCTGCCTAAAGCAATCTA
CAGATTCTATGCTATCCCCCCCCAAATTCCCACTCAATTCCTTCCCTGAT
TTATACCGAGCAATTTGCAAACTCCTCCGCAAAAAAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCCCCTACCCCCCCCCCACACACACACAC
AACCAATTTCAGATTTATCTTTTGGCAGTAAAGAAAAAATACTTTGCAGA
GAAAATTCCTAAACTTTGTGCTATGGAAATTCATATCATCTGTTAATCTT
GTTCTCTTTCTTTACAATTTATGTAGAAAACTTTAGTAGGTTTGTAGCAG
ATTTAAAGAAAAATTTCCTGTAACCTTTTTCCATTATTAGTTTAGAGAAA
AGGAAGACATTAGAAATTGTGACTATGTTCCTTTCAGAGCTAAGGAAAGA
AAGACATATTACTCTGTGCCAACCTTTGTCCCAGAGGAATGCCTCTAAAA
AAATGTTAATACCTTCAGAGGCTGGGGGGAAACAGCTTAGCAGTTAAGTA
AGTACAGTTCTTGCAGAGGACCCTAGTTTGGTTCAGTTCTGGTCACCAAT
CTCTAGTGTCTCATAATCACCTGTAACACCAGCAGTATGGGAGCCATGGT
GGTTTGAATAGATTTGGCCCCCATAGATTCCTACGTTTGAATGCTTGGCT
GCGGAGGCTGTCGCTATGTAGAGGTGTGTTCTTGCTGGGGGAAATGTGGC
CTTGTTGTAAGAAATGGTCCTTGTGTAAATGCCCTTCGAGGCCCCCCTTG
TTGTTTAACCCCCCCCCCGGGTGTAATTAAAATTTCCTCG

Query= MSMg01no446_p05.g1 MSMg01no446_p05.g1 CHROMAT_FILE:
MSMg01no446_p05.g1 PHD_FILE: MSMg01no446_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:37 2005
         (477 letters)



>mm_chr2_54989463_54990340
          Length = 878

 Score =  849 bits (439), Expect = 0.0
 Identities = 471/489 (96%), Gaps = 15/489 (3%)
 Strand = Plus / Minus

                                                                       
Query: 4   cccctacc----ccccccc---cacacacacacacaaccaatttcagatttatcttttgg 56
           ||||||||    |||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cccctaccaccacccccccacacacacacacacacaaccaatttcagatttatcttttgg 437

                                                                       
Query: 57  cagtaaagaaaaaatactttgcagagaaaattcctaaactttgtgctatggaaattcata 116
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 436 cagtaaagaaaaaatactttgcagagaaaattcctaaactttgtgctctggaaattcata 377

                                                                       
Query: 117 tcatctgttaatcttgttctctttctttacaatttatgtagaaaactttagtaggtttgt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcatctgttaatcttgttctctttctttacaatttatgtagaaaactttagtaggtttgt 317

                                                                       
Query: 177 agcagatttaaagaaaaatttcctgtaacctttttccattattagtttagagaaaaggaa 236
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 316 agcagatttaaagaaaaatttcctgtaacctttttgcattattagtttagagaaaaggaa 257

                                                                       
Query: 237 gacattagaaattgtgactatgttcctttcagagctaaggaaagaaa-ga-------cat 288
           ||||||||||||||||||||||||||||||||||||||||||||||| ||       |||
Sbjct: 256 gacattagaaattgtgactatgttcctttcagagctaaggaaagaaaggaactctttcat 197

                                                                       
Query: 289 attactctgtgccaacctttgtcccagaggaatgcctctaaaaaaatgttaataccttca 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 attactctgtgccaacctttgtcccagaggaatgcctctaaaaaaatgttaataccttca 137

                                                                       
Query: 349 gaggctggggggaaacagcttagcagttaagtaagtacagttcttgcagaggaccctagt 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gaggctggggggaaacagcttagcagttaagtaagtacagttcttgcagaggaccctagt 77

                                                                       
Query: 409 ttggttcagttctggtcaccaatctctagtgtctcataatcacctgtaacaccagcagta 468
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 76  ttggttcagttctggtcaccaatctctagtgtctcataatcacctgtaacgccagcagta 17

                    
Query: 469 tgggagcca 477
           |||||||||
Sbjct: 16  tgggagcca 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 878
Length adjustment: 10
Effective length of query: 467
Effective length of database: 868
Effective search space:   405356
Effective search space used:   405356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)