BAC Information

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BAC

Clone NameMSMg01-447M18
Chromosome2 (Build37)
Map Location 8,475,923 - 8,476,269
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672230
Downstream geneLOC100040710
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447M18.T7 (MSMg01no447_m18.b1)MSMg01-447M18.TJ (MSMg01no447_m18.g1)
ACCAG536164AG536165
length745738
length of high quality
(start - end)		483 (55 - 537)370 (80 - 449)
definitionCHROMAT_FILE: MSMg01no447_m18.b1 PHD_FILE: MSMg01no447_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:49 2005CHROMAT_FILE: MSMg01no447_m18.g1 PHD_FILE: MSMg01no447_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACAAATTATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTAAAGTTAACGTTTGACAATTTTTTTATTGTATATT
TTTGTTGTAAAAATTTTATACAGTATATTCTGATCAGTTTGCCCTCTGCC
AAGTACTCCTAGGTTTTCCCATACAACACTGTCCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCCCTCGCTCTA
GCAAACAGGAAAAAAAGCACATAAATCACAATTTAAAAATGCAAGTCACA
TACATAAAATCCATAAAAACACAAAGTTAGAAACCATAATACACAAGTAA
AAAAGCTAGTGATGTCAAAACCAAAATGAAAAAAAGTCCAACAAAACATT
ATGAGACACAGCATTTATAAAAACACCATTGAGTTCATTTTGTGTTGGAC
ATCTCCAAATGGACATGAAACCTGCCTTTATGTGTAGTTAATATACCCAA
TGAGACTCCATTCTTGAGGCTCATTTGGCTTGAACCTATGCAGGTCCGGT
GCATGCTATCACAGTCCCTGTGAATTCCCATGAGCATCACTGTTCTTGCT
AAAAATGTTTATTTAGATTGACAAGACTTGAAGAAATTTATTCAGTCTAT
TGAAAAATCCTAATTCTTATTGGAATTATCCATTACTAGTATCCGGAAAT
TTTACGATAAAAAATACTGAATTCTCCCAAAAAAAATATAAACAG

TATCTAACGATGAAATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGCTTTCTGCTTCAAGTTC
CTGTCTGAGTTCCTCCCCTGACTCCTATCAATGATGAACCATGTCCTGAA
AATATAAATCAAAAACTCCTTTCTTCTCTATGTTGTCTTTGGTCATAGTA
TTGTTTATAAGAATGTTTTGCTTTGTTTTTTTAGATATAAAATCACATGC
ACACAGGTACAAACACATGGACACACATAAAACACACACACACACACACA
CATACACACACACTGCCAACAACAACAACAACAATGAAACTATCTCAATT
TTCATTAGAAATAATATTCCAAAATTCAATGGGGATACTTTAGACATTAA
AAAAAATCATCTGGGAATGGTTCTTTTTAGGGGAGTTCCATATACATCGA
CTATAAATTAGTATAGAGATATACATTAGGGAACAAAAGTTAAATAAATT
TTCCTGTTTCCAAAAGTGGGTCCTAAACAATGTTTACATTTTGTATAAAC
AACAGGTCCAAAACGATGTTTGCAATAAATGAGATTCTCTTAATTCATTA
AACCATTGCGCAGGTGGGACCTTCTACCACTACAAAATTTTTTTTTGATG
CCTCTTTATCTTCCTCAGATAAAAAAAACCCCACCCCCTCTTCTTTTTTT
TTCTCTGATTCTCTTATTCTAATTTCCCTCTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_m18.g1 MSMg01no447_m18.g1 CHROMAT_FILE:
MSMg01no447_m18.g1 PHD_FILE: MSMg01no447_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:49 2005
         (370 letters)



>mm_chr2_8475701_8476469
          Length = 769

 Score =  580 bits (300), Expect = e-170
 Identities = 343/370 (92%), Gaps = 23/370 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgctttctgcttcaagttcctgtctgagttcctcccctgactcctatcaatgatgaac 60
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 223 catgctttctgcttcaggttcctgtctgagttcctcccctgactcctgtcaatgatgcac 282

                                                                       
Query: 61  catgtcctgaaaatataaatcaaaaactcctttcttctctatgttgtctttggtcatagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 catgtcctgaaaatataaatcaaaaactcctttcttctctatgttgtctttggtcatagt 342

                                                                       
Query: 121 attgtttataagaatgttttgctttgtttttttagatataaaatcacatgcacacaggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 attgtttataagaatgttttgctttgtttttttagatataaaatcacatgcacacaggta 402

                                                                       
Query: 181 caaacacatggacacacataaaacacacacacacacacacacatacacacacactgccaa 240
           |||||||||||||||||||||||||||||||| ||| |||                    
Sbjct: 403 caaacacatggacacacataaaacacacacac-cac-cac-------------------- 440

                                                                       
Query: 241 caacaacaacaacaatgaaactatctcaattttcattagaaataatattccaaaattcaa 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacaacaacaacaatgaaattatctcaattttcattagaaataatattccaaaattcaa 500

                                                                       
Query: 301 tggggatactttagacattaaaaaaaatcatctgggaatggttctttttaggggagttcc 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 tggggatactttagacattaaaaaaa-tcatctgggaatggttctttttaggggagttcc 559

                     
Query: 361 atatacatcg 370
           ||||||||||
Sbjct: 560 atatacatcg 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 769
Length adjustment: 9
Effective length of query: 361
Effective length of database: 760
Effective search space:   274360
Effective search space used:   274360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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