BAC Information

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BAC

Clone NameMSMg01-448B13
Chromosome2 (Build37)
Map Location 41,769,487 - 41,769,947
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042629
Downstream geneLOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448B13.T7 (MSMg01no448_b13.b1)MSMg01-448B13.TJ (MSMg01no448_b13.g1)
ACCAG536391AG536392
length979765
length of high quality
(start - end)
---461 (78 - 538)
definitionCHROMAT_FILE: MSMg01no448_b13.b1 PHD_FILE: MSMg01no448_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:14 2005CHROMAT_FILE: MSMg01no448_b13.g1 PHD_FILE: MSMg01no448_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTCCTCTACACTTCTGTTTAGCGAAGACCACTTTCCAGAAAGGGGGGA
AGNGACTAGTATTTTTCGCAAAAACGCCCGACTGCGACATGTACTCCGAT
TGCCACGGGCGACGGACTCCCCTTCCTAGAAGCTGAATACCAACGCTTTT
CCTTGTCAACTGACCATGGTCATTGATGGCCGGAATGCGAGGGCGACTGG
AACCCAAAAAAAGAGGGCGCGATAATGTACCTTATTTAACTCCACCTACT
AGTACTTAAGTGCCCTGACTATGACTTACCATTTGACTCGGTTTATATCC
TACCACCACGTATTATATATCCCCGCACTATAATTTCCGGTCCTTGTTCG
TGGTCATTATTCTTTATTATGCTTCTCAACAATACTGCCCATTTGCCCAA
CATGTGACTTGTTGACCTTTTGATGGTCGTGTTACCTTATTGAGTGCTGG
CTGTCCTGCACGGTATGATCTTGATATAACCGGGCCGTCACCGTGTCGTT
CCTTGGGTGTCATTCGCGGTTCGGTATCGCGACCACCACCTATTTTTGAA
TGCCGCCTAATAAAACACTGTATACTCCTCTGACAGTATTTGCCCTCTTT
ATCGCACTGTGAATTCGCACCGCGCCGCGTTTGATACGTGATTTATCTTA
TAATTTCCGTCCCTCCCGCCTTCTTTATCTCCGTCTTGCATGCGATTAGC
GCATCGTTTCATTCGCCGCCTGATACTCCACAATGAGAACAACTGAGCCA
CGAACAGGGGGAGAACAAAGGGTATGCGTCGGTGTTAAAACGTGTGGAGC
CGCTAAGATTGCGCCGGGCATTATATACACATAAAACCCGGGGAACAGTG
TCCTCTATTCTTCCACAGATAATGTGGCGGCCCCACGGCGTTCACCTAGC
GCGACTAATATTGTGGCAATTCGCGGTCGAATTACACGGCCAATCTGTAA
CATATGTCTTGATTCAATACCGTGTGAAC
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTGTTTTCATGTCTTTAATATT
AATTTATGGTTGGTAATTTGGCAGAAATCTTCTATTCCAATCTCAGTATG
GATATCTTCTTTAACTTTCCTGAACATATTTATAATCTTTCCCTGCTATC
TTTATTTTGTATATTAGCTAAGTGACTTTTCTCAAAGAATATTATAATGG
GAGTTATTATTTCTTAAGTCCCAGGTCATTTTTCACGAAGTCAAAAAAAT
ACCATTTTAAAATGATCTCTTCCAAATAAGTGCTAAAAAGGATATATAAT
TTCACTTACTCTGTATCACACCAGTGGTGGAGTCAACACTAGTCATCACA
GGAAGGACCAAGTTAATACTCATCTCTCAAGGGAAAAGGAGCAGCGAGTT
CCAATGGCAAGAATTAAAGTGAGTCTAAATATGAGGAGTCAGCAAAGAAT
GATGTCTAGGAATAGAAAATAANAAGAGTTATGCTGATTAGACTCATCAA
ATTTCCTCCTGAAATGTCCAAATATGTGCATATGTATTGATTTTAAAATG
CCCTGAAGATAATTCATAGTTCATTGGGGGGAAACCTTCCGGGGAATAAA
TTCTTCCTGGTCAGGTTAAATTAGACCGGGAGCCTTAATCCTAGACAAAA
ATACCCCCCCATTTTTTAAAGGGATTCTTTCTCACCCCCTTGTATCCAAA
AATTATTTAACAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_b13.g1 MSMg01no448_b13.g1 CHROMAT_FILE:
MSMg01no448_b13.g1 PHD_FILE: MSMg01no448_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:14 2005
         (461 letters)



>mm_chr2_41769287_41770147
          Length = 861

 Score =  795 bits (411), Expect = 0.0
 Identities = 450/464 (96%), Gaps = 6/464 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgttttcatgtctttaatattaatttatggttggtaatttggcagaaatcttctattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 attgttttcatgtctttaatattaatttatggttggtaatttggcagaaatcttctattc 602

                                                                       
Query: 61  caatctcagtatggatatcttctttaactttcctgaacatatttataatctttccctgct 120
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 601 caatttcagtatggatatcttctttaactttcctgaacatatttataatctttccctgat 542

                                                                       
Query: 121 atctttattttgtatattagctaagtgacttttctcaaagaatattataatgggagttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atctttattttgtatattagctaagtgacttttctcaaagaatattataatgggagttat 482

                                                                       
Query: 181 tatttcttaagtcccaggtcatttttcacgaagtcaaaaaaataccattttaaaatgatc 240
           |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||
Sbjct: 481 tatttcttaagtcccaggtcatttttcatgaagtcaaaaaaatatcattttaaaatggtc 422

                                                                       
Query: 241 tcttccaaa-taagtgctaaaaaggatatataatttcacttactctgtatcacaccagtg 299
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcttccaaaataagtgctaaaaaggatatataatttcacttactctgtatcacaccagtg 362

                                                                       
Query: 300 gtggagtcaacactagtcatcacaggaaggaccaagttaatactcatctctcaagggaaa 359
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 361 gtggagtcaacactagtcatcacaggaaggaccaagt-aatactcatctctcaaaggaaa 303

                                                                       
Query: 360 aggagcagcgagttccaatg-g-caagaattaaagtgagtctaaatatgaggagtcagca 417
           |||||||||||||||||  | | |||||||||||||||||||||||||||| ||||||||
Sbjct: 302 aggagcagcgagttcca--gcgtcaagaattaaagtgagtctaaatatgagaagtcagca 245

                                                       
Query: 418 aagaatgatgtctaggaatagaaaataanaagagttatgctgat 461
           |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 244 aagaatgatgtctaggaatagaaaataaaaagagttatgctgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)