BAC Information

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BAC

Clone NameMSMg01-448K06
Chromosome2 (Build37)
Map Location 123,135,465 - 123,135,675
singlet/doubletsinglet
Overlap genenone
Upstream geneDuoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik, LOC100043360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448K06.T7 (MSMg01no448_k06.b1)MSMg01-448K06.TJ (MSMg01no448_k06.g1)
ACCAG536806AG536807
length809809
length of high quality
(start - end)
214 (73 - 286)236 (70 - 305)
definitionCHROMAT_FILE: MSMg01no448_k06.b1 PHD_FILE: MSMg01no448_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:59 2005CHROMAT_FILE: MSMg01no448_k06.g1 PHD_FILE: MSMg01no448_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTAATCGTTTGCGCTATACGAATCACCATAGTGCGAAAAACCGCGGAAT
TCAGAATCTTTGTCCAAAAGAAACAGAAAGATGGGGTAGACCCAGCTTTG
TGAGCAACTGATATGGGGAAACTCTGTTCTAAGTATTCTTGACCACCAGC
TCTGTCAGAAAGCATCCAAGTTATTAATGGTATTTCTCATGCCAAATTAT
TCAGCTATTTATGTTCCACTGCCTATATTCACTAAATGTGACTAATTTTT
TTCCATACTATTTTCATTAACAGTTCTATTAGGTCCTCTGTAAAGGCATT
TATATGTATGTTTTTTCTGTATTCCTCTGAACAGTCATACGATATAAAAT
GCATTGTAATCCCATTCTACAAATGAAAAAGCTGACTCTGGATGTAGTTT
AAAAATATCTGCGTATATGGTGTTGACTGAGATACTAACCAAGTGAAGCA
ATATATCCTCTTATACTATTTACCGAATGCATTTACTATAGGTTTGGTCA
TCTCCCAATTCTTCAACACTGTCAACCCATGTTCACACTTCCTCCCTTCG
TCATTCATCCCCCTTTTCCACCCTTTTTCTCTTTTCCCCCTACCCCTCAA
CCCCCCTTTTCCCCTTTTCCCACCCCTTTTATCCCTATACTTTCTTCGCG
CCTCGCTTTCCTAATTCCCCACCTTTACCATATTTCTATCTCCTCCCAAC
CAATCCATTTTTTTACCTATTTCTTTTTCCCCTCCTTTTTATTTTATTTC
ATTAAACTTTGCCTTTTAGACCCATCAATTCGTTTCATATTATCTTTTCC
CCCCCTCCC
NNCCCCATGATGTGGTAGCCTGGCGGCGCCTGTTTCAGACTTTAGGTGAC
CTATAGAATTTCAGAAGAATCCTGATCTTTCCAGACTTTTATCATGAATG
GGTATTGGATTTCGTCAAATTCTTTCTCCGCATCTAATGAGATGATCATG
TGGTTTTTGTCTTTGAGTTTGTTTATATCATGGATTACCTTGATGGATTT
CCGTATTATAACCATCCCTGCATCCCTGGAATAAAACCTACTTGTTCAGG
ATGGATGATTGTTTTGATGTGTTCTTGGATTCGGTTAGAGATTATTCTAT
TGGGTATTTCNGTCCTTTTACACAAAAGGGAAATTGGGCCGAAGCTCTCT
TTTTTTTTCCCCCCCTTCTAGTGGTTATGAATAATATTTTTCGCCTTTTT
TTTTTTTCCCCCCTTCTTTTCTTTATTCTTTATTTCCCCCCCCTTCTTTT
TTTTTTTTTTCGCCCTTTTTTATTTTCTCTCCTTTCCCCCCCCACCCCCC
CCTTCACCCTTTTCCTCTTTTTTTTATTCGTCCATACCTTTCTTCTCCCC
CCCCTTTATTATTCTTTTCTTTTTTCTCTTTTCTATTATTCTATATCGTT
TTTCTTCTTCTCCCTTCCCCTTTTTCTACATTATTCTATTCTTTCCTGTC
TCTCCTCTTTCTTCATATTCTCTCTTTTCTTCTTTCTTTTCTTTTCTCCC
CTAATCTTGCCCCTCCTTTTCTTTTCTATATTACCTTATGTCTCACGCTC
GTGTTGCTTATTATTTCTCATTACATTCTTACTTTTCACTATGCTTTCTT
CTACTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_k06.b1 MSMg01no448_k06.b1 CHROMAT_FILE:
MSMg01no448_k06.b1 PHD_FILE: MSMg01no448_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:59 2005
         (214 letters)



>mm_chr2_123135265_123135878
          Length = 614

 Score =  393 bits (203), Expect = e-114
 Identities = 209/211 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagaaagatggggtagacccagctttgtgagcaactgatatggggaaactctgttctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 acagaaagatggggtagacccagctttgtgagcaactgatatggggaaactctgttctaa 352

                                                                       
Query: 61  gtattcttgaccaccagctctgtcagaaagcatccaagttattaatggtatttctcatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gtattcttgaccaccagctctgtcagaaagcatccaagttattaatggtatttctcatgc 292

                                                                       
Query: 121 caaattattcagctatttatgttccactgcctatattcactaaatgtgactaattttttt 180
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 291 caaattattcagctatttatgttccactgtttatattcactaaatgtgactaattttttt 232

                                          
Query: 181 ccatactattttcattaacagttctattagg 211
           |||||||||||||||||||||||||||||||
Sbjct: 231 ccatactattttcattaacagttctattagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)