BAC Information

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BAC

Clone NameMSMg01-448L02
Chromosome2 (Build37)
Map Location 28,780,901 - 28,781,229
singlet/doubletsinglet
Overlap genenone
Upstream geneCol5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1
Downstream geneLOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448L02.T7 (MSMg01no448_l02.b1)MSMg01-448L02.TJ (MSMg01no448_l02.g1)
ACCAG536845AG536846
length771767
length of high quality
(start - end)
249 (121 - 369)332 (77 - 408)
definitionCHROMAT_FILE: MSMg01no448_l02.b1 PHD_FILE: MSMg01no448_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:03 2005CHROMAT_FILE: MSMg01no448_l02.g1 PHD_FILE: MSMg01no448_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAATT
CTTTTTTTTTTCTCTTTCAAGAGAAAAAAACTTTATTCATCTTTGGAGGC
TAAAATGAGATGGCTCAGTGGTTGTTCTCCCATAGCACCTTGGTTCATTC
AATAGCACACACATGGCAGCCCATGTCCAGTTCCAGGGAATCTTCATCTG
GATTCCGAACACACTGACACATACTACACATTCATGGAAGAATGTCTTTT
ACAGTAGTAAATAGGATCTGTGAACGGGGCCCACAGGGGAGATCGCGGAA
TTCTTTTGCAAAAGTGAAAGCAAAAGTATGGGGCTGGGCCACAGGATGCT
GATTCATAGGATAACGGAAGGGAACCTGGAATAAATGACTGGATTGATAT
GTAAAATAAAAGACTGGGCTTGTGGTCTACAAGTTAGCCAGGGAATTTTG
CAGGAGAGAACTGCTTGGATAACTGATAACAGAGAGAGCTGTCTGGAGAT
TTCTAGAGAAAGCCTATGATCAGAGAGAAAGCAGTTTGGTACCCTGCCCC
CAGATATATCAATTTCACCAGTTTGGATCCAGGATTTGACCTCGACTCCG
TTGTTTGTTTTCTGCGCGAATTGGCCATCCTTTTCTTCTTAACACGTTTA
CCTGTGTTAAGTATCCACTGCCATGTTTGTTCCCCTTTTTCTTTTTCCTA
TTTTTGTGCCATTCCTCAAAAACTTCTAGTGCCCTTATTTAACTAAACAC
CGCATCGGCTCCCTTTCTTTG
NTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGCTGGTGTGAATTTACCTG
GGGCTGTTGGAGGAGGGACTCGGGTAGATCTGAAAGACAAGGAAGAGTCA
GGTGACAGCGTGGACCTTCAGTGCAGCAGGCAGAGAAGAAAGCAGACTTT
AAGCCTGAGGCAGAAGTGAGCATAACCAGAGGGGAACGAGAAGGGGCCAG
AGATGGGAGGTAACTCAGGGCTCAGGTAGGAAGTCCCTACCTCAGGTAGG
TCTTACTCTGTACTGGTTTTGTTGACCTCACCTGCTGGGCCTTGGCCTCT
TCCTTCAGAAGCCACAGACTTTGAAAGTCTGCTCTAGAATAAGGCTTGTA
AGGAGGGAGCTGAGAAGCGCCGGTTGGGTGGTCTCTTCCATTGCCCTCGC
TCGCTGTTTTCTCTCTCCCTTTTGTCCCCCCCTTTATTTTTTCCTTTTCG
TCCTCATGTTTTCTGTCTTACACCCTTTCGATGTTTTTATTCTTCCCCCT
TCTCTTTATTCCCTCCTCCCCCTCTCTTCGCGCTTTCACCGCGTTTCTCT
CTCTCGTTTTTTTCTCCCTTCGTCTTCGTTTTGCCATTGCCTTCTCTCCC
CCTCTTTTTTCTTTCTTTTATCCCGCCCCATTATTCTCTTGTTTTTTCCT
CCCTTCCCCGCCTTTCTTCTTTTTTTTTTCCCCTCCCCTTACTTTCCCTT
TCTCCTTTTCCCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_l02.g1 MSMg01no448_l02.g1 CHROMAT_FILE:
MSMg01no448_l02.g1 PHD_FILE: MSMg01no448_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:03 2005
         (332 letters)



>mm_chr2_28780701_28781432
          Length = 732

 Score =  551 bits (285), Expect = e-161
 Identities = 318/329 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaggctggtgtgaatttacctggggctgttggaggagggactcgggtagatctgaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 cacaggctggtgtgaatttacctggggctgttggaggagggactccggtagatctgaaag 260

                                                                       
Query: 61  acaaggaagagtcaggtgacagcgtggaccttcagtgcagcaggcagagaagaaagcaga 120
           ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 261 acaaggaagagtcaggtgacagcatggaccttcagtgcagcatgcagagaagaaagcaga 320

                                                                       
Query: 121 ctttaagcctgaggcagaagtgagcataaccagaggggaacgagaaggggccagagatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttaagcctgaggcagaagtgagcataaccagaggggaacgagaaggggccagagatgg 380

                                                                       
Query: 181 gaggtaactcagggctcaggtaggaagtccctacctcaggtaggtcttactctgtactgg 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggtaactcagggatcaggtaggaagtccctacctcaggtaggtcttactctgtactgg 440

                                                                       
Query: 241 ttttgttgacctcacctgctgggccttggcctcttccttcagaagccacagactttgaaa 300
              ||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 gcctggggacctcacctgctgggccttggcctcttccttcagaagccacaaactttgaaa 500

                                        
Query: 301 gtctgctctagaataaggcttgtaaggag 329
           ||||||||||||| |||||||||||||||
Sbjct: 501 gtctgctctagaacaaggcttgtaaggag 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)