MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-448L05
Chromosome	2 (Build37)
Map Location	33,572,945 - 33,573,148
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918
Downstream gene	2610528K11Rik, LOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Sh2d3c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27387 MGI:1351631
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tor2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30933 MGI:1353596
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ttc16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:338348 MGI:2443048
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptrh1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329384 MGI:1913779
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700019L03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227736 MGI:2447809
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Stxbp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20910 MGI:107363
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9130404D14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227737 MGI:2442910
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lrsam1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227738 MGI:2684789
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Snora65 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104367 MGI:2148176
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc2a8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56017 MGI:1860103
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Garnl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:99326 MGI:2139309
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ralgps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:241308 MGI:1922008
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Angptl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26360 MGI:1347002
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zbtb34 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:241311 MGI:2685195
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 49 ESTs, 4 Proteins

name	Zbtb43 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71834 MGI:1919084
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC676764 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:676764
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Lmx1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16917 MGI:1100513
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041918 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041918
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 642 ESTs, 2 Proteins pseudo : _no_value

name	2610528K11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72543 MGI:1919793
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041931 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041931
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Pbx3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18516 MGI:97496
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665948 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665948
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Mapkap1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227743 MGI:2444554
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC623448 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623448
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 1430 ESTs, 7 Proteins pseudo : _no_value

name	LOC623269 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623269
definition	note : DnaJ homolog subfamily B member 6 pseudogene pseudo : _no_value

name	Gapvd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66691 MGI:1913941
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sh2d3c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982734 GeneID:27387 MGI:1351631
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SH2 domain containing 3C transcript_id : NM_013781.2

name	Tor2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130175 GeneID:30933 MGI:1353596
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : torsin family 2, member A transcript_id : NM_152800.2

name	Ttc16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:28893556 GeneID:338348 MGI:2443048
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tetratricopeptide repeat domain 16 transcript_id : NM_177384.1

name	Ptrh1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802363 GeneID:329384 MGI:1913779
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) transcript_id : NM_178595.3

name	1700019L03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113931145 GeneID:227736 MGI:2447809
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700019L03 gene transcript_id : NM_025619.1

name	Stxbp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678178 GeneID:20910 MGI:107363
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : syntaxin binding protein 1 transcript_id : NM_009295.1

name	9130404D14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122640 GeneID:227737 MGI:2442910
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9130404D14 gene transcript_id : NM_146119.1

name	Lrsam1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40556365 GeneID:227738 MGI:2684789
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat and sterile alpha motif containing 1 transcript_id : NM_199302.1

name	Slc2a8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130693 GeneID:56017 MGI:1860103
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 2, (facilitated glucose transporter), member 8 transcript_id : NM_019488.4

name	Garnl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385742 GeneID:99326 MGI:2139309
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTPase activating RANGAP domain-like 3 transcript_id : NM_178888.4

name	Ralgps1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352282 GeneID:241308 MGI:1922008
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Ral GEF with PH domain and SH3 binding motif 1 transcript_id : NM_175211.3

name	Angptl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803564 GeneID:26360 MGI:1347002
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : angiopoietin-like 2 transcript_id : NM_011923.4

name	Zbtb34 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94366395 GeneID:241311 MGI:2685195
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 49 ESTs, 4 Proteins product : zinc finger and BTB domain containing 34 transcript_id : XM_140881.6

name	Zbtb43 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71037380 GeneID:71834 MGI:1919084
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger and BTB domain containing 43 transcript_id : NM_001025594.1

name	Zbtb43 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71037382 GeneID:71834 MGI:1919084
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger and BTB domain containing 43 transcript_id : NM_027947.2

name	LOC676764 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249250 GeneID:676764
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC676764 transcript_id : XM_001474275.1

name	Lmx1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754561 GeneID:16917 MGI:1100513
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LIM homeobox transcription factor 1 beta transcript_id : NM_010725.1

name	2610528K11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133893168 GeneID:72543 MGI:1919793
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2610528K11 gene transcript_id : NM_175184.4

name	LOC100041931 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249289 GeneID:100041931
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041931 transcript_id : XM_001478858.1

name	Pbx3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7949104 GeneID:18516 MGI:97496
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pre B-cell leukemia transcription factor 3 transcript_id : NM_016768.1

name	Mapkap1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61098167 GeneID:227743 MGI:2444554
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitogen-activated protein kinase associated protein 1 transcript_id : NM_177345.3

name	Gapvd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254513 GeneID:66691 MGI:1913941
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTPase activating protein and VPS9 domains 1 transcript_id : NM_025709.2

name	Sh2d3c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305329 CCDS:CCDS15928.1 GeneID:27387 MGI:1351631
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005068 - transmembrane receptor protein tyrosine kinase adaptor protein activity [Evidence TAS] GO_process : GO:0007165 - signal transduction [Evidence TAS]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 note : novel SH2-containing protein 3; Cas/HEF1-associated signal transducer; SH2-containing Eph receptor-binding protein 1 product : SH2 domain containing 3C protein_id : NP_038809.1

name	Tor2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22779883 CCDS:CCDS15929.1 GeneID:30933 MGI:1353596
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0051085 - chaperone cofactor-dependent protein folding [Evidence IEA] codon_start : 1 product : torsin family 2, member A protein_id : NP_690013.1

name	Ttc16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893557 CCDS:CCDS15930.1 GeneID:338348 MGI:2443048
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : tetratricopeptide repeat domain 16 protein_id : NP_796358.1

name	Ptrh1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30519902 CCDS:CCDS15931.1 GeneID:329384 MGI:1913779
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] codon_start : 1 note : novel protein similar to bacterial peptidyl-tRNA hydrolase product : peptidyl-tRNA hydrolase 1 homolog protein_id : NP_848710.1

name	1700019L03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113931146 CCDS:CCDS15932.1 GeneID:227736 MGI:2447809
definition	codon_start : 1 product : hypothetical protein LOC227736 protein_id : NP_079895.1

name	Stxbp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678179 CCDS:CCDS15933.1 GeneID:20910 MGI:107363
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007412 - axon target recognition [Evidence IMP]; GO:0015031 - protein transport [Evidence IEA]; GO:0016188 - synaptic vesicle maturation [Evidence IMP]; GO:0006810 - transport [Evidence IEA]; GO:0006904 - vesicle docking during exocytosis [Evidence IEA]; GO:0016192 - vesicle-mediated transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : minisatellite 10g detected by probe MMS10; UNC-18 homolog product : syntaxin binding protein 1 protein_id : NP_033321.1

name	9130404D14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122641 CCDS:CCDS15934.1 GeneID:227737 MGI:2442910
definition	codon_start : 1 note : novel PH domain containing protein product : hypothetical protein LOC227737 protein_id : NP_666231.1

name	Lrsam1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40556366 CCDS:CCDS15935.1 GeneID:227738 MGI:2684789
definition	GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : leucine rich repeat and sterile alpha motif containing 1 protein_id : NP_955006.1

name	Slc2a8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506735 CCDS:CCDS15937.1 GeneID:56017 MGI:1860103
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015284 - fructose uniporter activity [Evidence ISS]; GO:0005354 - galactose transporter activity [Evidence ISS]; GO:0005536 - glucose binding [Evidence IDA]; GO:0005355 - glucose transporter activity [Evidence IEA] [Evidence IDA]; GO:0005351 - sugar porter activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0015755 - fructose transport [Evidence ISS]; GO:0015757 - galactose transport [Evidence ISS]; GO:0006006 - glucose metabolism [Evidence TAS]; GO:0015758 - glucose transport [Evidence IDA]; GO:0008286 - insulin receptor signaling pathway [Evidence IDA]; GO:0001666 - response to hypoxia [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : glucose transporter X1; intestinal GLUT8 transporter product : solute carrier family 2, (facilitated glucose transporter), member 8 protein_id : NP_062361.1

name	Garnl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542097 CCDS:CCDS15938.1 GeneID:99326 MGI:2139309
definition	GO_function : GO:0005083 - small GTPase regulator activity [Evidence IEA] codon_start : 1 product : GTPase activating RANGAP domain-like 3 protein_id : NP_849219.2

name	Ralgps1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424836 CCDS:CCDS15939.1 GeneID:241308 MGI:1922008
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] codon_start : 1 product : Ral guanine nucleotide exchange factor RalGPS1A protein_id : NP_780420.1

name	Angptl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560520 CCDS:CCDS15940.1 GeneID:26360 MGI:1347002
definition	codon_start : 1 note : angiopoietin related protein 2 product : angiopoietin-like 2 protein_id : NP_036053.2

name	Zbtb34 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63489785 GeneID:241311 MGI:2685195
definition	codon_start : 1 product : similar to zinc finger and BTB domain containing 34 protein_id : XP_140881.4

name	Zbtb43 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71037383 CCDS:CCDS15942.1 GeneID:71834 MGI:1919084
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; zinc finger protein 297B; ortholog of zinc finger protein 297B ZNF297B product : zinc finger protein 297B isoform a protein_id : NP_082223.2

name	Zbtb43 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71037381 CCDS:CCDS15943.1 GeneID:71834 MGI:1919084
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; zinc finger protein 297B; ortholog of zinc finger protein 297B ZNF297B product : zinc finger protein 297B isoform b protein_id : NP_001020765.1

name	LOC676764 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249251 GeneID:676764
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474325.1

name	Lmx1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754562 CCDS:CCDS15944.1 GeneID:16917 MGI:1100513
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0009953 - dorsal/ventral pattern formation [Evidence IEP]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence ISS]; GO:0030326 - embryonic limb morphogenesis [Evidence NAS]; GO:0030182 - neuron differentiation [Evidence IMP]; GO:0001764 - neuron migration [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation function : transcription factor note : LIM homeo box transcription factor 1B product : LIM homeobox transcription factor 1 beta protein_id : NP_034855.1

name	2610528K11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254287 CCDS:CCDS15946.1 GeneID:72543 MGI:1919793
definition	codon_start : 1 product : hypothetical protein LOC72543 protein_id : NP_780393.2

name	LOC100041931 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249290 GeneID:100041931
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478908.1

name	Pbx3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7949105 CCDS:CCDS15947.1 GeneID:18516 MGI:97496
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IDA] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007585 - respiratory gaseous exchange [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : pre B-cell leukemia transcription factor 3 protein_id : NP_058048.1

name	Mapkap1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893485 CCDS:CCDS15948.1 GeneID:227743 MGI:2444554
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA] codon_start : 1 product : mitogen-activated protein kinase associated protein 1 protein_id : NP_796319.1

name	Gapvd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254514 CCDS:CCDS15949.1 GeneID:66691 MGI:1913941
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA] GO_process : GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 product : GTPase activating protein and VPS9 domains 1 protein_id : NP_079985.2

name	LOC665948 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665948
definition	number : 2 pseudo : _no_value

name	LOC665948 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665948
definition	number : 1 pseudo : _no_value

name	Snora65 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:86604689 GeneID:104367 MGI:2148176
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : small nucleolar RNA, H/ACA box 65 transcript_id : NR_002898.1

name	LOC100041918 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149249288 GeneID:100041918
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 642 ESTs, 2 Proteins product : similar to histone pseudo : _no_value transcript_id : XR_033935.1

name	LOC623448 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149249291 GeneID:623448
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 1430 ESTs, 7 Proteins product : similar to Ribosomal protein S3a pseudo : _no_value transcript_id : XR_033976.1

clone name	MSMg01-316O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-197E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131A14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-499A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481O15
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-309M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477M12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-161B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-188O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-204O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140A05
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-448L05.T7 (MSMg01no448_l05.b1)	MSMg01-448L05.TJ (MSMg01no448_l05.g1)
ACC	AG536851	AG536852
length	874	1,001
length of high quality (start - end)	209 (44 - 252)	---
definition	CHROMAT_FILE: MSMg01no448_l05.b1 PHD_FILE: MSMg01no448_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:04 2005	CHROMAT_FILE: MSMg01no448_l05.g1 PHD_FILE: MSMg01no448_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:04 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAATCCGCGGAAT TCCATCTCTGTTCCCCACTGCCACCCGAAACCTTTCTTTTGCAGAATGTG GAACTGGGGTGTTTTTCATTAATCTCGAAACAGCGCAGGTAACGCCGATG AGTCCGCTGGGTTTTACAGGCCGGAAGTAGCTTTGTTACTCCGTAGATAG ATTAGATAAGTGGCTGTCTTGTCAGAATAAGCAGGTTTTCCTCTTATTAC GTGCTACAATTCCTTATTGATATTCTTCCCGCCTCCTAATTATTTCTATT TAAGCAGAAACTACGCGGTTCCCNCTTTAAATTCTCCTCATCTGCCTTTT TTTTTTTTACTTATAACTTCCCTTTCTTTTCTTTTTTTTTCTTCCTTCTT CATATTTCTTTTTTCCCCTCTCTTTACCTTTTTTCTCCCTTTTTTTCCCC CTCTTTTCCCCACCTCCTTTTTTTGTCTCCCTTTCTTTTTCTTTTCTCTT TTTCCTTAATTCCTTTCTTTTCCTTTCTTTCCCCGCCGCCCTTTTATCTT CTTTCCTTCTTTTCCTACCTCCCCTTTCTTTTCTCCCTTTCTTTTTTTTC CCTTCCTTTTTATCTCCCTTTTCTTCCCTTTCTCTTTGTTTTTAAAATTT TTTAAACAACTTTTCCTCCCTCTCGCTTTAACTTCTTCTCTTCGTCATTT CCGCCCTACATTTTTTTACTTTTTCACGTTCTTTCCCCTGTTTATTTTTT TTACTCTCTTTTTTTGTCTCTCCCTACTGTCTCTCCCTCTCCTCCATATA CTTTCCCCTTTACGCCTTTCATCTTATACCCTCATTTGTTTTTCAAATAG TTTCTGTTTCTTTTTCTTTTATCC	AACAACAAACCAGCCGGAAGGGGGGGGGGGGGCGGAATCCGGACCCGANG GGGNNNNNNNNNNTTACANCCACGCGGGGGGGGGNNACGAGCAGGGAAGC CCCGCCAACGCAAGAAATTTCTCCCCACAACCAAAACCAAAAAAACCCAC CGAAAACAAACAAAAGATTCTTATAATGGAGGGGGAACAAACACAAAAAA AACAACAAAACCCCCATACTCCCTCACAGACACCACCTACAATACTACAA CCGCAAAAAAAACACCCCTATTATTATCAACAACGAACAACAGATAAACA AAACACCCCACCCCACATCAAAAAACAAACACAAAACAAAAAAAAAAAAA GCACATTTATTTTATATTAAAAAAAACCAAAACACACAGAAACAACAGAA ACAAAACAAAGATAAATTATACCCCCCACAAAACAAACAGACAACAAAGA TACACAGAACAGAACACAAAACCCCATAAAAAATTCAAAATACACCCAAC CAAAAAAAAAAACAAGAACAACAAAAACACCAAATAAGAAGAAACAAAAA TAAAATCAACACCAAAAACAACAACACCACCACCATATACCAAAACCGAA TCCACCACAAAAAAGCAAGAAACAAAAAAACCAAACCCACCACACACTAA AATAAAACCCAAGAACAAACACCAACGATATAGATATACAACTCAACAAA GAGACACCCAACTAAACACTATATCACAACAACACATACAACACCAACAC GACTATATAACACCCCCAACCCCCCAACCACCTTAATATACGCAACCAAA AAACACCCAGAACTACACACCACCATAAATAACCTCAACACCACTATCAA ACCACACACGACACACAACANCAACACAAAGACAATACCAAGAAATAATA ACACACCACACCACCCTTCGTATCAACACAAAGAACGCCGCGCGAATCAC CAACAACAATCATCAATGTTCCGCACACAATNTAAACACCACGACGCCAC C
quality values	Open. Hide. 8 8 8 10 9 16 24 18 12 12 10 16 16 27 13 17 20 24 28 24 37 29 19 16 16 16 19 25 25 25 9 9 9 10 10 11 11 10 10 10 11 12 19 21 24 30 29 30 31 31 41 33 33 33 33 30 27 23 11 11 12 10 10 13 16 19 20 30 33 37 37 33 36 36 36 47 57 57 57 57 59 57 57 57 57 57 57 59 59 53 48 54 54 54 54 54 48 48 41 43 43 48 48 54 54 54 54 57 68 68 68 68 59 59 57 57 57 57 57 57 41 41 41 48 48 57 57 48 39 42 37 39 39 47 44 44 44 44 48 48 59 59 47 43 37 35 36 50 36 36 35 36 36 50 50 50 50 42 42 35 47 59 59 57 57 57 47 36 36 28 28 28 36 40 42 39 37 42 30 30 30 42 44 59 57 57 57 57 54 57 57 59 43 43 31 31 31 40 42 50 57 43 43 30 30 30 43 42 43 43 39 39 32 35 39 40 40 43 43 43 39 39 30 30 28 19 23 18 16 13 23 21 28 28 30 30 30 17 9 10 10 6 6 8 19 25 41 39 24 16 11 10 8 8 8 8 8 11 13 11 15 18 19 19 11 9 9 9 12 6 6 6 8 8 9 10 10 14 12 12 9 9 9 9 9 9 10 10 10 10 10 10 8 8 8 8 6 6 12 7 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 10 15 3 0 3 13 12 12 10 11 9 7 10 8 8 10 8 8 8 8 8 8 10 10 10 10 10 10 22 21 25 32 25 25 12 14 13 10 9 9 9 13 10 8 8 8 8 8 9 8 8 8 8 17 14 27 21 15 9 8 8 8 13 19 22 12 12 12 27 26 19 19 13 13 13 18 18 13 15 10 8 8 8 8 8 10 11 21 15 12 10 10 13 8 8 10 10 13 10 12 9 8 8 8 8 8 8 9 12 12 13 12 19 13 10 10 10 9 9 13 10 10 8 11 8 8 8 8 10 15 10 10 10 9 10 14 23 14 8 8 8 8 8 8 10 11 17 10 8 8 8 8 8 8 8 6 8 6 6 8 8 11 11 15 15 14 16 16 12 10 10 19 17 15 8 6 6 8 10 10 14 14 23 22 15 13 10 10 8 8 10 10 11 10 10 10 8 9 14 10 10 12 12 10 10 9 9 10 11 15 20 18 18 11 11 11 12 12 12 22 19 12 10 10 8 8 8 10 18 15 16 23 23 13 13 10 10 10 10 12 16 26 22 15 13 9 9 10 10 11 9 9 9 9 9 8 8 6 9 8 8 8 10 10 9 8 11 12 10 9 12 15 10 11 12 10 10 10 14 16 20 16 26 8 8 8 6 10 10 12 9 9 10 12 11 18 18 28 28 18 14 9 9 9 8 6 10 6 9 13 8 8 8 10 8 8 7 7 7 8 8 9 12 12 15 12 11 11 11 11 12 12 6 6 8 8 8 8 8 8 12 13 14 10 9 9 9 9 14 15 12 8 8 6 6 6 7 8 8 10 10 17 21 29 16 14 11 10 8 8 8 10 8 8 8 8 8 8 15 14 8 6 6 6 8 8 8 8 6 6 6 7 8 10 11 9 6 6 6 8 8 14 19 13 7 6 6 8 8 10 12 12 12 12 15 13 16 12 11 11 11 10 8 8 8 8 9 16 22 21 21 14 14 10 12 9 9 12 9 10 9 9 8 8 8 8 8 11 10 8 10 10 10 8 10 8 8 8 8 9 10 17 16 16 21 16 16 8 8 8 8 8 8 8 8 8 8 8 8 10 8 10 11 10 10 17 12 19 18 18 10 9 9 9 9 10 10 10 13 10 7 6 7 6 6 6 8 8 8 8 8 8 8 8 6 7 6 8 8 9 18 10 11 6 6 8 6 6 6 8 9 12 6 6 6 6 6 10 10 10 9 9 10 10 12 12 12 12 11 8 8 8 8 8	Open. Hide. 11 16 11 9 9 9 12 10 9 9 7 8 19 15 6 6 8 8 10 8 8 8 10 11 19 22 25 24 24 16 16 13 13 10 7 7 6 6 8 6 6 6 6 8 6 9 9 3 0 3 15 16 3 0 0 0 0 0 0 0 0 0 0 3 6 6 6 3 0 3 8 8 9 7 7 7 8 8 9 10 12 11 17 3 0 0 3 6 6 6 6 8 8 8 8 7 8 8 8 8 8 6 6 8 6 8 8 8 10 10 10 10 10 10 12 23 12 11 8 8 8 8 8 8 16 10 9 9 10 10 10 12 12 12 12 10 10 10 10 10 13 13 10 10 10 10 8 8 10 8 6 6 9 15 15 8 8 8 8 9 14 16 13 10 9 9 6 6 6 6 6 10 6 6 8 8 8 8 6 6 8 8 8 12 14 13 11 11 11 16 12 9 9 8 10 8 12 10 10 10 8 8 8 8 8 8 10 8 8 10 8 8 8 8 8 7 8 7 8 8 8 11 8 9 9 8 8 8 8 6 8 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 15 8 8 8 8 8 8 10 20 16 13 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 8 8 8 8 6 6 8 10 10 10 8 8 8 8 6 6 8 8 8 8 6 6 8 15 15 17 12 12 8 8 8 8 8 8 8 8 8 8 8 10 13 15 15 8 8 8 8 12 10 9 9 13 12 9 9 8 8 10 10 11 8 8 10 9 9 10 10 13 10 8 8 10 10 12 12 11 11 9 9 9 9 9 6 7 6 9 9 9 9 7 7 6 7 6 6 10 15 12 18 21 21 15 8 8 8 8 8 11 22 20 19 17 11 8 8 6 6 11 8 11 11 13 13 9 9 8 8 6 6 8 8 10 8 8 8 12 11 8 8 6 6 10 8 9 8 8 8 8 8 8 10 16 11 12 7 7 8 8 8 8 8 8 8 15 15 8 6 7 8 8 9 10 8 10 8 8 8 8 9 8 8 8 8 8 10 12 8 8 8 8 13 13 10 7 7 8 8 8 11 12 11 11 8 8 8 16 16 10 10 8 8 8 8 8 8 8 8 8 8 12 11 10 8 8 9 11 11 11 11 10 9 9 8 8 10 12 16 19 16 12 12 11 9 6 8 6 6 7 7 8 10 10 14 8 9 9 10 10 20 14 11 8 8 6 6 8 6 8 9 9 9 9 9 10 10 9 9 10 10 10 10 9 9 8 8 7 7 8 6 9 10 11 11 10 10 9 9 12 10 18 10 10 9 8 8 6 6 8 8 8 8 9 10 10 10 11 9 9 10 10 10 10 9 8 8 8 8 8 8 8 8 9 10 7 6 8 6 8 12 16 9 9 9 10 10 10 9 10 12 14 14 13 11 14 8 8 6 6 6 6 15 11 10 10 9 11 12 14 15 13 13 13 9 9 9 9 18 15 11 11 10 12 10 12 12 10 8 8 8 8 8 10 8 9 9 9 10 8 8 7 7 12 8 11 11 11 8 8 8 8 8 8 8 12 10 12 9 9 9 10 8 10 8 8 9 7 10 13 10 8 8 12 8 8 8 8 8 8 8 10 12 18 12 11 10 11 11 11 10 8 8 8 8 8 9 11 14 8 8 8 6 8 6 6 6 7 10 7 7 6 6 8 8 8 6 6 6 6 10 10 8 8 8 8 8 8 8 9 9 9 9 10 10 10 8 8 8 8 8 10 8 6 6 6 6 8 8 10 8 9 9 6 6 6 6 8 8 8 7 7 8 8 8 8 10 8 10 10 12 15 20 20 15 19 8 11 11 10 6 8 6 6 8 8 8 6 6 6 6 8 8 6 7 8 12 6 6 6 8 8 8 8 8 10 9 8 8 8 8 8 8 8 8 8 6 6 8 6 8 8 8 13 8 9 9 9 9 9 11 9 9 10 10 10 9 10 3 0 3 6 8 8 8 9 10 10 8 8 8 8 10 8 10 10 11 8 8 8 8 8 10 7 6 6 6 6 9 15 19 11 8 8 8 8 8 8 7 7 10 6 6 8 8 8 6 6 8 8 8 8 6 6 11 10 8 8 8 8 8 8 8 10 8 8 8 8 6 6 6 7 7 7 8 10 10 10 9 10 10 10 8 7 11 7 9 10 8 6 6 6 8 10 8 8 8 8 8 10 9 10 11 16 22 22 19 13 9 3 0 3 9 8 6 6 6 6 6 10 6 6 6 6 6 6 10 10 10 10

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no448_l05.b1 MSMg01no448_l05.b1 CHROMAT_FILE:
MSMg01no448_l05.b1 PHD_FILE: MSMg01no448_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:04 2005
         (209 letters)



>mm_chr2_33572742_33573349
          Length = 608

 Score =  352 bits (182), Expect = e-102
 Identities = 200/206 (97%), Gaps = 3/206 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattccatctctgttcc-ccactgccacccgaaacctttcttttgcagaatgtggaact 62
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaattccatctctgctccaccactgccacccgaaacctttcttttgcagaatgtggaact 348

                                                                       
Query: 63  ggggtgtttttcattaatctcgaaacagcgcaggtaacgccgatgagtccgctgggtttt 122
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ggcgtgtttttcattaatctcgaaacagcgcaggtaacgccgatgagtccgctgggtttt 288

                                                                       
Query: 123 acaggccggaagtagctttgttactccgtagatagattagataagtggctgtcttgtcag 182
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 287 acaggccggaagtagctttgttactcggtagatagattagataagtggctgtcttgtcag 228

                                     
Query: 183 aataagcaggttttcctcttattacg 208
           |||||||||||||| || ||||||||
Sbjct: 227 aataagcaggtttt-ct-ttattacg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 608
Length adjustment: 9
Effective length of query: 200
Effective length of database: 599
Effective search space:   119800
Effective search space used:   119800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information