BAC Information

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BAC

Clone NameMSMg01-449A08
Chromosome2 (Build37)
Map Location 100,072,527 - 100,072,942
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621386, LOC668702
Downstream geneLOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449A08.T7 (MSMg01no449_a08.b1)MSMg01-449A08.TJ (MSMg01no449_a08.g1)
ACCAG537095AG537096
length779815
length of high quality
(start - end)
417 (51 - 467)121 (125 - 245)
definitionCHROMAT_FILE: MSMg01no449_a08.b1 PHD_FILE: MSMg01no449_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:30 2005CHROMAT_FILE: MSMg01no449_a08.g1 PHD_FILE: MSMg01no449_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCC
GCGGAATTCTATTTACATTACTCTAAGTCATATTATTGTTCATCAGTGTT
TAATTTATTTGATAGTAGAAAAGTGCTTTCTGATAAGAGAGATGAGCCAA
ATCATCTTATAGAAAATGGCTAGTCCTGTTATTTTGTTTATTTTTATCCT
CAACGTATCATCAGAGGTCAGCTGTGAAAATTAACTACACAACCCATCAA
TCCATGTAAAACTATTATACAAATTTGAATTAACATTTATTTACAACCCC
TTAGTATCAACTAACCAACCACCCAGAGCACCAAGGTAATAAATCACCAA
CCAAAGAGTACACATGGTGGGATTCATGGCTCTAGCTGCATATGTAGCAG
AGGATGGCCTTTTCAATCATCAATGGGAGGGAAGGCCCATGATCCTGTGA
AGGATCTATGCCTCAGTGTAGGGTAATGCCAGGGCTAGGAAGCAGGAGTG
AGTGGCTTGTTGAGCAGGGGTGGGGTGAGGNATATTTTTCTTTTTTTTTT
TTTTTTCTTTATCTTTTATTACACCTATTATTATACCTTTTCTTCTAATT
TCTTTCTCATTATTCCTTGTTCTTTCCTATCTCTTTTTTATTTCCTCTCT
TTTACATTTATTACTCTCTTCTCTCTAATTAATATTTCCTTTTACTAATC
CTTTTACCTCTCATTTTCCCTTCTATCTTTCATGTTTACACCTCCCTCAT
CCTTTTATCTTTTCCCTGTTTCTTTTTGA
NNNCCCGATGAAGTGGTAGCCTGGGGGCGCCTGTTTCCCACTTGAGGTGA
ACTATAGAAGTTACGNGACTTCTTGATCTTCCCAAGTCATTTATCATGAA
TTGGTGTTGGATTTTATTGACACGATCATGTGGTTTTTGTCTTTGAGTAT
GTTTACATATTGGATTATGTTGATGGATTTCCACATATTAAACCATCCCT
GCATCCCTGTAATGAAACCTACTTGGTCAGGATGGATGATTGATTTGATT
TTTTTTTGCCCCCACCCACCAAGAACCGCACCGAGACACCACGCACCCAC
ACACACAAGGCACATTTTTCCTGCATTCACACACAGAGAGGAAAAGAACG
GAAGGTTTTTTTTCCCCCCCCCCTCTTGATTATTATAAAGATTTGGTATT
TGTATCTTTTTCACCCCCCCCTCTTTTTTTTTTTTGTTTTCCCCTCCCGC
CACCCTTACCCCGACTCATATTTTCTATATAACTACCTCTTTCATTCCTT
CTCTTCTTCTGCTTTTGTTTTTTCATTCCCTCATTATTCTTCTTCTCCTT
CCTTCCTAATCATTTTCTTATATTCTATCTCCTATCCCCTTCCTCCTTAC
TTTCTTTCTTATTTTTCTCCTCCTAACTAATAATTCTTTTTCACTCTTAA
TCATTCAACACCAACTACCCCTTTTTTTTCTCCCCCGCTTCCCCCGCCAT
ATCTTTCTTCTTTTTTTTTTTTTCTCCCCGCTGCACAAAGTATCTTTTTC
TACAACTTTTCTGTAAAAAAGTTGTTTTTAGTACCATATGACTATTCATA
ACGTTCTTGCCAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_a08.b1 MSMg01no449_a08.b1 CHROMAT_FILE:
MSMg01no449_a08.b1 PHD_FILE: MSMg01no449_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:30 2005
         (417 letters)



>mm_chr2_100072324_100073141
          Length = 818

 Score =  694 bits (359), Expect = 0.0
 Identities = 397/417 (95%), Gaps = 15/417 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctatttacattac-tctaagtcatattattgttcatcagtgtttaatttatttga 62
           ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctatttacataaaatctaagtcatattattgttcatcagtgtttaatttatttga 263

                                                                       
Query: 63  tagtagaaaagtgctttctgataagagagatgagccaaatcatcttatagaaaa-tggct 121
           ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||
Sbjct: 264 tagtagaaaagtgctttctgataagtgagatgagccaaatcatcttata-aaaagtggct 322

                                                                       
Query: 122 agtcctgttattttgtttatttttatcctcaacgtatcatcagaggtcagctgtgaaaat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agtcctgttattttgtttatttttatcctcaacgtatcatcagaggtcagctgtgaaaat 382

                                                                       
Query: 182 taactacacaacccatcaatccatgtaaaactattatacaaatttgaattaacatttatt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taactacacaacccatcaatccatgtaaaactattatacaaatttgaattaacatttatt 442

                                                                       
Query: 242 tacaaccccttag------------tatcaactaaccaaccacccagagcaccaaggtaa 289
           |||||||||||||            |||||||||||||||||||||||||||||||||||
Sbjct: 443 tacaaccccttaggaagaacaacagtatcaactaaccaaccacccagagcaccaaggtaa 502

                                                                       
Query: 290 taaatcaccaaccaaagagtacacatggtgggattcatggctctagctgcatatgtagca 349
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 503 taaatcaccaaccaaagagtacacatggtgggactcatggctctagctgcatatgtagca 562

                                                                    
Query: 350 gaggatggccttttcaatcatcaatgggagggaaggcccatgatcctgtgaaggatc 406
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 563 gaggatggccttttcaatcatcaatgggaggggaggcccatgatcctgtgaaggatc 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 818
Length adjustment: 9
Effective length of query: 408
Effective length of database: 809
Effective search space:   330072
Effective search space used:   330072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)