BAC Information

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BAC

Clone NameMSMg01-449P12
Chromosome2 (Build37)
Map Location 112,767,352 - 112,767,794
singlet/doubletsinglet
Overlap geneRyr3
Upstream geneLOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven
Downstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449P12.T7 (MSMg01no449_p12.b1)MSMg01-449P12.TJ (MSMg01no449_p12.g1)
ACCAG537812AG537813
length744743
length of high quality
(start - end)
565 (51 - 615)280 (334 - 613)
definitionCHROMAT_FILE: MSMg01no449_p12.b1 PHD_FILE: MSMg01no449_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:44 2005CHROMAT_FILE: MSMg01no449_p12.g1 PHD_FILE: MSMg01no449_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGG
ATCCGCGGAATTCTATCTCTGTTCCCTTTAAAGTGTCCCCCCATGCCCCT
CACTAATATTTTGACCTCTATATGTATTCAAAATGAAATAAACATATCAG
AAGCTTCAAAACTCACACCCACACCTGAGAGATTTGTCTTTCTGGATCCA
GGTAATTTCATGCAGAATGATTGTTTCCAGCTCCACCCATTGACCTGTGA
ACTTCATAATTTTATTTTTTAACAGCTTAATAATACTCCATTGTGTAAAA
ATACCACTTTTTCATTATTCACTCATTGTTTTACAGACACTTAGATTGTT
TCCATTTCCTGGCTGTTATGAAATTTATGTTAACAGGTGGTGTTTTAAGC
TCCTAAATTGTGGCATTTGTGGTAAATAAGCATTTAAATTATGGAAGATA
TCAATTACTGAAAATGAGTTGACTGACCACTTAAAAGTCACTTGCTAACA
TTATCTCTGTTAGGGTGAGGGAAGTAGACATCTAAGAGAGAAGCATATAA
AATCAGACTAGAATGAGGAACCTACCAACTGCTTCATTTTCCATCGTCTT
GCAGATCCCTGAAGTATCCAAAGCTTCAATGCATTGGTTTTACAATTAAC
AACAGATAAGAGAAGTCAGAGATGTTCTGAAATCCTAGCTAGCTTGAAGA
CATGATTATTTGGATAATAGCTTTTTGTCTTACAAACTCTTGAN
NNNTTCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCAGCAGAAATCCTATATGATCCATTAATTT
CATTCCTGGATTTATATACAAGAATTACCGGTTACCTTGACAGACAGCTG
AACAGTCCAAGTTCACACAGCACCATTGCTCCTAACTTGTAAAATAGAGA
AGCAAGCTAAGTATCACTCAGTGGATAACTGGGTAAGAGAGGAAGGGGCT
TCGTGTTGTCTAAGTCCATGTAATGGGTGATCCTTGCAGATTCATTAAGT
GAGATAAGTGAACCAAGCAAAGCTAATTCCTTGTAGCTTTAACTCAGATC
ACAAGGGCAGTAAAAACCATGTAGACAGAAAGAGAAATGGCGGCTGCCAG
GGGCTCCAGGGAGGGAGGAACAGGGAGTTACCGTGACATGGGCAGGGCTT
AGTTTGGTGAAATGGAAGGAGCTATGGAGGTGAATCTGGTGCTGGTCACA
TAACATTATAAAAGGCTTCCAGGAGTCTGAACTGTACACTTGAATAAGCA
GAGTATATTTTTTTGTATGGATTAATTTTTCTTTTTTTCTTGGTTATTTT
ATTTACATTTCTAATAGATGTGACTTCTGCCAAGACAGATGAAGAGGTAC
TGAANGACTAAGCCCCTTCCCTGGTCACCCCTCAAACCAAACTGAAGCAA
TTGTCCAGTTGGTCCAAAAAAGACGGTGAAACTGGGCTCTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_p12.b1 MSMg01no449_p12.b1 CHROMAT_FILE:
MSMg01no449_p12.b1 PHD_FILE: MSMg01no449_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:44 2005
         (565 letters)



>mm_chr2_112766830_112767794
          Length = 965

 Score =  841 bits (435), Expect = 0.0
 Identities = 441/443 (99%)
 Strand = Plus / Minus

                                                                       
Query: 123 acctgagagatttgtctttctggatccaggtaatttcatgcagaatgattgtttccagct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 acctgagagatttgtctttctggatccaggtaatttcatgcagaatgattgtttccagct 906

                                                                       
Query: 183 ccacccattgacctgtgaacttcataattttattttttaacagcttaataatactccatt 242
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 ccacccattgacctgtaaacttcataattttattttttaacagcttaataatactccatt 846

                                                                       
Query: 243 gtgtaaaaataccactttttcattattcactcattgttttacagacacttagattgtttc 302
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 845 gtgtaaaaataccactttttcattattcactcattggtttacagacacttagattgtttc 786

                                                                       
Query: 303 catttcctggctgttatgaaatttatgttaacaggtggtgttttaagctcctaaattgtg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 catttcctggctgttatgaaatttatgttaacaggtggtgttttaagctcctaaattgtg 726

                                                                       
Query: 363 gcatttgtggtaaataagcatttaaattatggaagatatcaattactgaaaatgagttga 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gcatttgtggtaaataagcatttaaattatggaagatatcaattactgaaaatgagttga 666

                                                                       
Query: 423 ctgaccacttaaaagtcacttgctaacattatctctgttagggtgagggaagtagacatc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ctgaccacttaaaagtcacttgctaacattatctctgttagggtgagggaagtagacatc 606

                                                                       
Query: 483 taagagagaagcatataaaatcagactagaatgaggaacctaccaactgcttcattttcc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 taagagagaagcatataaaatcagactagaatgaggaacctaccaactgcttcattttcc 546

                                  
Query: 543 atcgtcttgcagatccctgaagt 565
           |||||||||||||||||||||||
Sbjct: 545 atcgtcttgcagatccctgaagt 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)