BAC Information

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BAC

Clone NameMSMg01-450F07
Chromosome2 (Build37)
Map Location 34,888,530 - 34,888,693
singlet/doubletsinglet
Overlap geneHc
Upstream genePbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1
Downstream geneAI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450F07.T7 (MSMg01no450_f07.b1)MSMg01-450F07.TJ (MSMg01no450_f07.g1)
ACCAG538086AG538087
length753767
length of high quality
(start - end)
249 (364 - 612)288 (329 - 616)
definitionCHROMAT_FILE: MSMg01no450_f07.b1 PHD_FILE: MSMg01no450_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:13 2005CHROMAT_FILE: MSMg01no450_f07.g1 PHD_FILE: MSMg01no450_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGTACTGGGCGCGGAA
TCACTTAGTTCAACAAACAGGCCTCGAACTCAGAAATCCACCTGCCTCTG
CCTCCCGAGTGTTTGGACTAAAGGAGTGCGCCACCACTGTCCGGCTTTAG
ATGTCTTCTTCTTAAAGTGCTGTTTTCCTATTACAGAAGGCAACTCTCTG
GGCCCATGTTAGGTAACTTCTCTGAATCTATTCATACCTAGCAAATTTTT
TAGATGTTCTTAGTGTTCTGATGTACTCAGTCTTGACATCTTGATTTTGA
TGTTTAAGTCATTTAATAGATGACGGNGNGATACTTTTCAAAATAAAATC
TTTCATATCAGAGAAAACATTAAATTTCATTATAACATATATTATGATGT
ACAGAGTGCACCCTCCAATTTTGAAAGAATACTTATTGTGTGCGCGCATA
TGCACAGGTGTGTAATATGTGTGTCACAGGACATGTATGAAGGTCAAAAG
TCAGTTCTTCCCTTCCAACATGTGCGTTCTAGGACGGAACTCAAATCATC
AGACTTGACAGCAATCACCCTTGCCCAGTGAGCCATCTCACTGACCCATA
CCAGTGACACACAATTAGAACATATTCTGAATGCCTGAATCCAATTATTT
ATTATTTTTGCTTCCTTACCCACTCTTTGNTGGTTAATTCATTTATCGAG
ACCAATATACAGCCCTGGCTGTCCTGGAAAAATACCCTAAAACTCCTTTT
TGG
NNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATTGTTCTGGAAGATGGTGGGCAG
AAGAATCAAACACTGGAGGAGGACAGGTCTGTGTATCCTGTTCATGGAGA
CCAGAAAATGATGTTGCCCCCTCCCCAGGAGCTAGAGTTGTGAGACCCCG
ACTTAGAGCATTTCTCCCTGGAAGCCAGAGAGATGATAATTGAAGGAAGA
CCTACAAAGACATGGAGATAGACACGCCGGAGAGGAGGCTGCAACTCACT
CACACACACACACACACACACTTTTATTCACACACCCGAGCCAGAAAGGA
GCTGTAGCCAACTCTCCTCCCAATTCCTCAGCTAGCTGTTAAAAGCCCCC
TACTGTCACCGCTCAGGGTCGAACTCCCCTGCCCTGCACAGCGGAGGGAC
TTCGTCCTCAACTAGCTGATAATAAAACCTCTTGCAGTTTGAAAAAAAAA
GAAAAAAGAAAAAAATATATAGCTCTCTAATTTCCTATTATGTGGTTTTG
AACTAAAATCAGCATGATTTATAGATAGCTCCTGAGCCTCAATGTCCTTC
TTTCTTGGGGGGAGGGCATGAGGAGGGGTAGAGTTCTCTACCGTGTTTCT
TTGGGCAATTTTTTTTCTCCTTTAAACTTTTTCCGTACTTCAGTTTTTTC
CTCTTAATTTTGTTTTTTTCTTGTTTCCGCCCTCCCTTGTGTTTGATACT
ACACGCGTTGTATCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_f07.g1 MSMg01no450_f07.g1 CHROMAT_FILE:
MSMg01no450_f07.g1 PHD_FILE: MSMg01no450_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:13 2005
         (288 letters)



>mm_chr2_34888166_34888853
          Length = 688

 Score =  250 bits (129), Expect = 1e-70
 Identities = 157/167 (94%), Gaps = 6/167 (3%)
 Strand = Plus / Minus

                                                                       
Query: 121 acttcgtcctcaactagctgataataaaacctcttgcagtttgaaaaaaaaagaaaaaag 180
           ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 528 acttcgtactcaactagctgataataaaacctcttgcagtttggaaaaaaaagaaaaa-g 470

                                                                       
Query: 181 aaaaaaatatatagctctctaatttcctattatgtggttttgaactaaaatcagcatga- 239
           ||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||| 
Sbjct: 469 aaaaaaa-atatagctctctaatttcctattatgtgattttgaactaaaatc-gcatgac 412

                                                          
Query: 240 -tttatagatagctcctgagcctcaatgtccttctttc-ttgggggg 284
            ||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 411 atttatagatagctcctgagcctcaatgtccttctttaattgggggg 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)