BAC Information

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BAC

Clone NameMSMg01-450P24
Chromosome2 (Build37)
Map Location 64,083,055 - 64,083,529
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667257, Fign
Downstream geneLOC620544, LOC667291, Grb14, Cobll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450P24.T7 (MSMg01no450_p24.b1)MSMg01-450P24.TJ (MSMg01no450_p24.g1)
ACCAG538593AG538594
length783787
length of high quality
(start - end)
489 (47 - 535)475 (78 - 552)
definitionCHROMAT_FILE: MSMg01no450_p24.b1 PHD_FILE: MSMg01no450_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:06 2005CHROMAT_FILE: MSMg01no450_p24.g1 PHD_FILE: MSMg01no450_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTGGCACTGCAAAAGATGATGTTCTGAACAGAGCACCATTAAC
ACAGACACTAAGGTCCAAATTAATAAATGGGACCACATGAAAGTAAAAAT
CTACATGGCAGTAGGACTGTCATTTGGACCTGTAGGACTGTCATTTGGAC
CTGTCACAGTCTATAGAGTAGAAAAATTTTACCAGCTCCACATATCATAG
AGAACAAATATCAAAAATATATAAAGAACTCAAAAAACTTAATATCAAGT
AAAGAAATAACCCATTAAAACAGTGTGCACACTAAATAGAACTCCCAAAG
AAAGAATAAAAATGGTTGAGAAACACTTAAAGAAATGTTTAACACCCTTA
GTCATCATGAAAATATGAATAAAAACTAATTTGAGATTTCATTTCACATA
TATCAGAATGTCAAAGATAAATAAAACAAATTACAACTCATGCTGGTGTG
GATGTGGAGTAAGGAGAACATTCATCTATTGCTACTGGGACTGCAAGCAC
ATACAGCTACTGTGGAAATCAGTGTTGTGTTTCCGCAGGAAGACAGGAAT
CAAAGGACCTCAAGGCCCAGTTATACCATCCTTTCATAAAGTGGTGGTTT
GAATATGAATGGCCCTAGTAACCCTCATGCGTCTGAAAGGGTGGGTCCTA
AAAAAATGGCTTTATATAAAGGGGGACCCTTGTTTTACAAATTGGGGGCC
TTTTTGGAATAAAACGTGCTCCCCCTCTCCTCC
NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATGGCCATTGCTCAGGTGGAAG
ATTGGGAGAGCTGCCATCTTAATGATGCCTCTCAGTGGGAGACACAGTTT
GATGAGCCTGAATAGCCTGGAAGAATCGACTTCAGGATAGAAAGAAAGAG
TATCTGAGAGACTCACTGCTTTGGGGGGCAATCTTGAAATACTGAGTGGT
TCAGCTTCTTTCTAATTGAATTTGTGTAATTTTCTGTCTCTCTTTAGGAG
AGTGTATTTCAATTTTTATTTTAAACCCTCAACTAGTATCTGTCATTTCT
TAATGCTGAAGTTCATTCATTTAATTACTTTTGATACTGCCAATAACTAC
ATCTCTTAATTATTCTCTTTTGTTCTGTAGGAAACTGATGCAGAGTTTCC
CTTCACATATTTCCATACTTCTGACACTGAATTCTGGGGTTCTTGAAGCT
GTTTCTACTGTTTTTTCTCATCTTAACAGNTCAAGGTTATGATTTGATTA
GAGAGGTTTTCATGCTATGNCAGTTAGGTTGCCTTTTACCTGAAGATGCT
ATGTGAGGATTTTGTTTANNACATTCTTAATTTCTCTTTCCTTCATCCTT
TCATCTCTATCAAACTGTCCCAAGNAACCTTTTTCTCCCTTTATTTCAAT
AAAAAAGGAGTTAAACCCATTCTTTTATCCCCCTATTTTTTTATATCCCC
CCCCCTTATTTTTGGGGATTATATTAAACCAATCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_p24.g1 MSMg01no450_p24.g1 CHROMAT_FILE:
MSMg01no450_p24.g1 PHD_FILE: MSMg01no450_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:06 2005
         (475 letters)



>mm_chr2_64082855_64083729
          Length = 875

 Score =  913 bits (472), Expect = 0.0
 Identities = 474/475 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggccattgctcaggtggaagattgggagagctgccatcttaatgatgcctctcagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggccattgctcaggtggaagattgggagagctgccatcttaatgatgcctctcagtg 260

                                                                       
Query: 61  ggagacacagtttgatgagcctgaatagcctggaagaatcgacttcaggatagaaagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagacacagtttgatgagcctgaatagcctggaagaatcgacttcaggatagaaagaaa 320

                                                                       
Query: 121 gagtatctgagagactcactgctttggggggcaatcttgaaatactgagtggttcagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtatctgagagactcactgctttggggggcaatcttgaaatactgagtggttcagctt 380

                                                                       
Query: 181 ctttctaattgaatttgtgtaattttctgtctctctttaggagagtgtatttcaattttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttctaattgaatttgtgtaattttctgtctctctttaggagagtgtatttcaattttt 440

                                                                       
Query: 241 attttaaaccctcaactagtatctgtcatttcttaatgctgaagttcattcatttaatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttaaaccctcaactagtatctgtcatttcttaatgctgaagttcattcatttaatta 500

                                                                       
Query: 301 cttttgatactgccaataactacatctcttaattattctcttttgttctgtaggaaactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttttgatactgccaataactacatctcttaattattctcttttgttctgtaggaaactg 560

                                                                       
Query: 361 atgcagagtttcccttcacatatttccatacttctgacactgaattctggggttcttgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcagagtttcccttcacatatttccatacttctgacactgaattctggggttcttgaa 620

                                                                  
Query: 421 gctgtttctactgttttttctcatcttaacagntcaaggttatgatttgattaga 475
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 gctgtttctactgttttttctcatcttaacagttcaaggttatgatttgattaga 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)