Query= MSMg01no451_a08.b1 MSMg01no451_a08.b1 CHROMAT_FILE:
MSMg01no451_a08.b1 PHD_FILE: MSMg01no451_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:08 2005
(672 letters)
>mm_chr2_95935388_95936458
Length = 1071
Score = 1122 bits (580), Expect = 0.0
Identities = 634/652 (97%), Gaps = 1/652 (0%)
Strand = Plus / Plus
Query: 4 ggaattcatagccagtatgcctcaagatctctgtgccaagatcccggtcagaaaactgta 63
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaattcatagccagtatgcctcaagatctctgtgccaagatccaggtcagaaaactgta 263
Query: 64 tctcccagcctccagattaggaccactggtgagcctccaattctggattgtagttcattc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctcccagcctccagattaggaccactggtgagcctccaattctggattgtagttcattc 323
Query: 124 cagatatagtcaagttgacaaccaggagtagccactacatttggtggttggacagcttac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagatatagtcaagttgacaaccaggagtagccactacatttggtggttggacagcttac 383
Query: 184 ttggaattcatccagtttgtgagatctctagtagaatataagcccctgttggaggatggg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttggaattcatccagtttgtgagatctctagtagaatataagcccctgttggaggatggg 443
Query: 244 atacatcaaggtgtggaagactgggataaggtatagggattctgaaatagtgagggtgga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atacatcaaggtgtggaagactgggataaggtatagggattctgaaatagtgagggtgga 503
Query: 304 gaattttgcaggggaggggcagcctacctggagctctcccttcaaagtctcaagtagagt 363
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 504 gaattttgcaggggaggggcagcctacctggaggtctcccttcaaagtctcaagtagagt 563
Query: 364 aaagcaataattaattctccacataaaaaatgcacatcatccttccgctcaactcgagac 423
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 564 aaagcaataattaattctccacataaaaa-tgcacatcatccttccgctcaactcgagac 622
Query: 424 tcgagccccgggctaccttgccagcagagacttgcccaacacccgcaagggcccacacgg 483
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 623 tcgagccccgggctaccttgccagcagagtcttgcccaacacccgcaagggcccacacgg 682
Query: 484 gacaccccacgggaccctaagacctctggtgagtggaacacagcgcctgccccaatccaa 543
||| |||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gactccccactgaatcctaagacctctggtgagtggaacacagcgcctgccccaatccaa 742
Query: 544 tcgcgcagaacctgagactgcggtacatagggaagcaggctacccgggcctgatctgtgg 603
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 743 tcgcgcggaacctgagactgcggtacatagggaagcaggctacccgggcttgatctgggg 802
Query: 604 cacaagtcccttccgcacgactcgagacccgggctaccttgccagcagagtc 655
||||| ||||||| | | ||||||| ||||||||||||||||||| |||||
Sbjct: 803 cacaaaccccttccactccactcgagccccgggctaccttgccagctgagtc 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space: 702382
Effective search space used: 702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_a08.g1 MSMg01no451_a08.g1 CHROMAT_FILE:
MSMg01no451_a08.g1 PHD_FILE: MSMg01no451_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:08 2005
(608 letters)
>mm_chr2_96130849_96131860
Length = 1012
Score = 946 bits (489), Expect = 0.0
Identities = 563/609 (92%), Gaps = 37/609 (6%)
Strand = Plus / Minus
Query: 1 tctaatgaaaatctggtgaaggggttaacagtgtgtgataataccagataagaagtctct 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tctaatgaaaatccggtgaaggggttaacagtgtgtgataataccagataagaagtctct 545
Query: 61 ctttatctctccctgtgaccttgctgcaaattttgcgttccagagtgctttcaactccag 120
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 544 cttcatctctccctgtgaccttgctgctaattttgctttccagagtgctttcaactccag 485
Query: 121 ctgaatgagacagactggcaggtatcttgtttactttccctgttttggtttgtgtattta 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 484 ctgaatgagacagactggcaggtatcttgttttctttccctgttttggtttgtgtattta 425
Query: 181 attgttgctagtttctgtcccctagaaattgttgtttcgccttatgcaagaccaaacttg 240
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 424 attgttgccagtttctgtcccctggaaattgttgtttcgccttatgcaagaccaaacttg 365
Query: 241 tgtcttccatgtatttttttttt----ggggggga--ctgcttgttcggacaagacctct 294
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 364 tgtcttccatgtatttttttttttggggggggggagactgcttgttcggacaagacctct 305
Query: 295 aaaattaaaaagagaaagagggagtttaaaatatagagagtgtaattttaacacatgaag 354
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 304 aaaattaaaaagagaaagagggagtttaaaata--gagagtgtaattttaacacatgaag 247
Query: 355 atatccacatgctgagaaaacaatccattgtattttttcaaacattagagaaaaagaaaa 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atatccacatgctgagaaaacaatccattgtattttttcaaacattagagaaaaagaaaa 187
Query: 415 agaaaaacagtgagtgagagagagagagagagagagagagagagag-------------- 460
|||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 186 agaaaaacagtgagagagagagagagagagagagagagagagagagagagagagagcgag 127
Query: 461 ------------gaaaataaaatgaggacactagaatgaacacagccaggctgttggcaa 508
||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 126 agagagagagaggaaaataaaatga---cattagaatgaacacagccaggctgttggcaa 70
Query: 509 agctggcagagatgcccctgccagtgtgcagcagagcacaaaagggctgtggcactgttc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 agctggcagagatgcccctgccagtgtgcagcagagcacaaaagggctgtggcactgttc 10
Query: 569 agcatggat 577
|||||||||
Sbjct: 9 agcatggat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1012
Length adjustment: 10
Effective length of query: 598
Effective length of database: 1002
Effective search space: 599196
Effective search space used: 599196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
