BAC Information

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BAC

Clone NameMSMg01-451G01
Chromosome2 (Build37)
Map Location 91,277,984 - 91,278,353
singlet/doubletsinglet
Overlap gene1110051M20Rik
Upstream genePtprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289
Downstream geneLrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451G01.T7 (MSMg01no451_g01.b1)MSMg01-451G01.TJ (MSMg01no451_g01.g1)
ACCAG538881AG538882
length769740
length of high quality
(start - end)
389 (52 - 440)529 (82 - 610)
definitionCHROMAT_FILE: MSMg01no451_g01.b1 PHD_FILE: MSMg01no451_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:36 2005CHROMAT_FILE: MSMg01no451_g01.g1 PHD_FILE: MSMg01no451_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTACTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGCCTTTCCATTTTTTTTTCCTGAGGCAATGGGGAACAG
AACGCCAAACACTTGGGAGGTGGAGGTAGAAGGACCAACCATGGATCCAG
TGCAGGGCCACCAAAGGGCACCTTCCAAAAACACAAACCAACGATGTGAC
ACAGGTCTGTCTCTCCCTGGCAGACGTCTGTTTACCGGAGCCTAGAGAGT
TGTCCAGGTGAGAGAAACCTGAGATTAATTAACACCTGGTGACATCCTGA
GGCACAAACAAATTTGTTTTCGATTACGGGAGCCGAATCTGTGTTATCAC
AATCATCTGTAATCTCAGGGCCAGAACATAGCTTTAATAAGACCTTGAGC
TACACAACTGGACGGCCAGAAAAAGGCTCCTACTCTCTCCAAAGAACAGA
GCTTCTAAAAGCTAATTTTCCTTCTTTCATGAAAGAAAAAGAAAGGTCCT
GGGAGAAGTGCCTCTTTTTATTAATATTCTACTTTTAGTGGCGCTCCTGC
TAATCAAACTAAAGATATTGCGAAAGGTTTCATGAAATTATACTTCGCGG
CGATTTTCAATGTAATTTGCCCTGTTTCAAAGCAAAGATTCTTCTAGAAT
AACACAATTTAATTGGGATTTAGTTATTTGGGATAAATTCCTGTACGTTG
TTTGGTAAAAATCCCCTTCCTCTCCTTTGATAATATCATTTAAATACTCT
TGTTACATATATACGGCCN
TTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGAGCTATA
CAGAGAAACCCTGTCTCGAAAAACAAAACAAAACAAAACAAAACAAAACA
AAAACAAACAAACAAACAAAAAAAAAGAATACTTCTCTTTTAGACTGTGT
TACTACTAAACCTTCAATTAAAAAAAACAAGAGTAGTGGAACATACCTAT
GATCAGCACGTTGAAGGCTGAGGGAGCAGGAGGATTTTAAGTTTGAGTTC
AGCTTAGGCTACACAGCCAAGTTCCAAGATATCCTGGGCTACAAAGTGAG
AACCAGCCTTCAAACAAACAAAAACAACAGCAGCAGCAACAAAACCCCAA
ACAAACAATCTTATCTATATGTATATAGTCTGTTTCATTCATTCATATAT
ATATATATATATGAATAAAGAGCTCAGTGGTAGGGCATGTCCTACTTAGT
TTAAGGTCCTGGGTTTCATTCACAGTACTGCCAAAATTTAAAAAGACAAC
TCAACAACAAAAAGTAACAAGCAAAAGATCTCCATTCATCATATGAGGCT
TGGAAAGCTCAGAGTATTTACTCTGTCTAAACTAAAAACTCAATTGTCTC
ATGTCCAGTGCTTTTCCTGTAGTGATGGGAAAAATGTTCCTACAGGAAAA
AAAAATTTTTTCTCTTTATAATCCAAAAAATAGTTGTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_g01.b1 MSMg01no451_g01.b1 CHROMAT_FILE:
MSMg01no451_g01.b1 PHD_FILE: MSMg01no451_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:36 2005
         (389 letters)



>mm_chr2_91277765_91278553
          Length = 789

 Score =  708 bits (366), Expect = 0.0
 Identities = 369/370 (99%)
 Strand = Plus / Plus

                                                                       
Query: 20  atttttttttcctgaggcaatggggaacagaacgccaaacacttgggaggtggaggtaga 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 atttttttttcctgaggcaatggggaacagaacgccaaacacttgggaggtggaggtaga 279

                                                                       
Query: 80  aggaccaaccatggatccagtgcagggccaccaaagggcaccttccaaaaacacaaacca 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aggaccaaccatggatccagtgcagggccaccaaagggcaccttccaaaaacacaaacca 339

                                                                       
Query: 140 acgatgtgacacaggtctgtctctccctggcagacgtctgtttaccggagcctagagagt 199
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 340 acgatgtgacacaggtctgtctctccctggcagacgtctgtttaccggagcctaaagagt 399

                                                                       
Query: 200 tgtccaggtgagagaaacctgagattaattaacacctggtgacatcctgaggcacaaaca 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tgtccaggtgagagaaacctgagattaattaacacctggtgacatcctgaggcacaaaca 459

                                                                       
Query: 260 aatttgttttcgattacgggagccgaatctgtgttatcacaatcatctgtaatctcaggg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aatttgttttcgattacgggagccgaatctgtgttatcacaatcatctgtaatctcaggg 519

                                                                       
Query: 320 ccagaacatagctttaataagaccttgagctacacaactggacggccagaaaaaggctcc 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ccagaacatagctttaataagaccttgagctacacaactggacggccagaaaaaggctcc 579

                     
Query: 380 tactctctcc 389
           ||||||||||
Sbjct: 580 tactctctcc 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)