Query= MSMg01no451_h22.b1 MSMg01no451_h22.b1 CHROMAT_FILE:
MSMg01no451_h22.b1 PHD_FILE: MSMg01no451_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:46 2005
(591 letters)
>mm_chr2_52291398_52292390
Length = 993
Score = 1112 bits (575), Expect = 0.0
Identities = 585/589 (99%), Gaps = 2/589 (0%)
Strand = Plus / Minus
Query: 5 gaattcattaagatgacggctccagttgtgaagaagctgaagaccacggcttagttccca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 gaattcattaagatgacggctccagttgtgaagaagctgaagaccacggcttagttccca 921
Query: 65 gcagccacacggtggctcacaaccatgtgtaactccagtccaaggagatctgacctccat 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 gcagccactcggtggctcacaaccatgtgtaactccagtccaaggagatctgacctccat 861
Query: 125 gggtgccaggcacacatgtggtacacagacacacatgcaggcaaaatgtttatacttata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gggtgccaggcacacatgtggtacacagacacacatgcaggcaaaatgtttatacttata 801
Query: 185 aaataaatagaacttagattttgttttaattaaaggagaaaacgaaaccttacactggtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aaataaatagaacttagattttgttttaattaaaggagaaaacgaaaccttacactggtc 741
Query: 245 ttgagctgtcactgagaaagcctg--cccccccccaagtttctctttctgaagaattctg 302
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 740 ttgagctgtcactgagaaagcctgcccccccccccaagtttctctttctgaagaattctg 681
Query: 303 ctatgaagggataatgagtttcacttagatttctgagggccctgagatctctcctagact 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctatgaagggataatgagtttcacttagatttctgagggccctgagatctctcctagact 621
Query: 363 taatagtcagctattcacagtaatagtaatcaacttgctctcaattgcacggcaccatgg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 620 taatagtcagctattcacagtaatagtaatcaacttgctctcaattgcacggcaccacgg 561
Query: 423 acagcacttcagcgcagataggcctccaggctgcctttaactgttcttgttctgaaggct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acagcacttcagcgcagataggcctccaggctgcctttaactgttcttgttctgaaggct 501
Query: 483 gctgaacctcccctcccccttgtacagacagaatgcgtgagcagatttggaaatgatgac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctgaacctcccctcccccttgtacagacagaatgcgtgagcagatttggaaatgatgac 441
Query: 543 aggtcccgagtttccaggggtctttaggggcctcccctggtcagtgtag 591
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aggtcccgagtttccaggggtctttaggggcctcccctggtcagtgtag 392
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 993
Length adjustment: 10
Effective length of query: 581
Effective length of database: 983
Effective search space: 571123
Effective search space used: 571123
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_h22.g1 MSMg01no451_h22.g1 CHROMAT_FILE:
MSMg01no451_h22.g1 PHD_FILE: MSMg01no451_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:46 2005
(566 letters)
>mm_chr2_52128649_52129614
Length = 966
Score = 1094 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 1 cacagtcaaataaaaagcatcagcaattccaaatctctgtggaatttaaacaatgaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagtcaaataaaaagcatcagcaattccaaatctctgtggaatttaaacaatgaaaaa 260
Query: 61 aaagaaaagaaaattgccaagcttggagacttcccactcagccaacagagctaggacaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaaaagaaaattgccaagcttggagacttcccactcagccaacagagctaggacaag 320
Query: 121 aaggaaagggagttagatatcaaatgcattttctaatgaaagtttcgcattccttattgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggaaagggagttagatatcaaatgcattttctaatgaaagtttcgcattccttattgc 380
Query: 181 agggcttgtcccagtttgttcaaaatagccatcttttctttccattgttttaattccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggcttgtcccagtttgttcaaaatagccatcttttctttccattgttttaattccttt 440
Query: 241 taggaaaaatttcatagcttagccccaggacttgctctttctggtaggtctcttagctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggaaaaatttcatagcttagccccaggacttgctctttctggtaggtctcttagctca 500
Query: 301 aggggcactttgaaaaatgaaacccaacaattcttcaaagttgtaactgctatcccagcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggggcactttgaaaaatgaaacccaacaattcttcaaagttgtaactgctatcccagcc 560
Query: 361 tccatggacagccttgctccaaatttgaacaaagattagggagggagagatgctcaattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccatggacagccttgctccaaatttgaacaaagattagggagggagagatgctcaattg 620
Query: 421 tctttaacaaaagacaacaatctattagtttctaaatgttctttctcatacattaagaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctttaacaaaagacaacaatctattagtttctaaatgttctttctcatacattaagaga 680
Query: 481 catcactgagttaattttctatgactggtgggaacaggctaaccagagagatagaaacag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catcactgagttaattttctatgactggtgggaacaggctaaccagagagatagaaacag 740
Query: 541 gggggattatacttacatcgctcatg 566
||||||||||||||||||||||||||
Sbjct: 741 gggggattatacttacatcgctcatg 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
