Query= MSMg01no451_j09.b1 MSMg01no451_j09.b1 CHROMAT_FILE:
MSMg01no451_j09.b1 PHD_FILE: MSMg01no451_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:53 2005
(590 letters)
>mm_chr2_71723373_71724362
Length = 990
Score = 1069 bits (553), Expect = 0.0
Identities = 579/591 (97%), Gaps = 6/591 (1%)
Strand = Plus / Plus
Query: 5 gaattccaggtctgaccagctgtggatacagagtaagactgttacaacaacaacaacaac 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaattccaggtcagaccagctgtggatacagagtaagactgttacaacaacaacaacaac 258
Query: 65 aacaaatcctacaattaaaaacatttttaggcatttaaattttcaatgtttccaaaaag- 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aacaaatcctacaattaaaaacatttttaggcatttaaattttcaatgtttccaaaaaga 318
Query: 124 -----aaaaaaaaagtagacttctggaaccctgaccatctttctgagatgtctcaaagac 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaaaaaaaaaaaaagtagacttctggaaccctgaccatctttctgagatgtctcaaagac 378
Query: 179 aaatatatatgcagatatatatttaatgcatataataatctctttagcctgctgtttctt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaatatatatgcagatatatatttaatgcatataataatctctttagcctgctgtttctt 438
Query: 239 ttcctttgtttatggcatgtttctccatgctgacgtttttttaagtttctgtggcccttt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttcctttgtttatggcatgtttctccatgctgacgtttttttaagtttctgtggcccttt 498
Query: 299 ctgtcattattctgttacggctcagaccttccctcactaaaattgttgaggtatactttc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 499 ctgtcattattctgttacggctcagaccttccctcactaaaattgttgaggtatattttc 558
Query: 359 ttctgctgagagctgtaagttttcatttgtcggtactgttggcctcatgttgggcaagac 418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 559 ttctgctgagagctgtaagttttcatttgtcggtactgttggcctcttgttgggcaagac 618
Query: 419 ggaagtacgtttctttaatgctcctttgttttgtttgcttcacactagatggctatgaga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggaagtacgtttctttaatgctcctttgttttgtttgcttcacactagatggctatgaga 678
Query: 479 acgctaggcggctttgtgatttgtattatgttaactctcctgaacttgaacttgaagaac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 acgctaggcggctttgtgatttgtattatgttaactctcctgaacttgaacttgaagaac 738
Query: 539 taaatggtaagccagcctggggtcgccagtccaagtaacgggttttctgac 589
|||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct: 739 taaatggtaagccagcctgggggcgccagttcaagtaacgggtgttctgac 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_j09.g1 MSMg01no451_j09.g1 CHROMAT_FILE:
MSMg01no451_j09.g1 PHD_FILE: MSMg01no451_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:53 2005
(587 letters)
>mm_chr2_71899664_71900645
Length = 982
Score = 1062 bits (549), Expect = 0.0
Identities = 576/587 (98%), Gaps = 5/587 (0%)
Strand = Plus / Minus
Query: 1 aagaccacagtggtcaagaaagacaatgtctcaaagttttaaaacataaaacacaagtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 aagaccacagtggtcaagaaagacaatgtctcaaagttttaaaacataaaacacaagtga 723
Query: 61 aaggctatagctcagcagtagagtttctgtgtgacatgtgagccctgggtttggtggcag 120
|||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 722 aaggct----c-cagcagtagagtttctgtgtgacatgtgagccctgggttcggtggcag 668
Query: 121 gtgggctccagagtgcctagacaaagttgtagtaccttctgtagatcagttttgtggcca 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 667 gtgggctccagagtgcctagacaaagttgtagtatcttctgtagatcagttttgtggcca 608
Query: 181 catttgacctcttgctccaggcttcctgggctcaggaccctttagccttcttcttgccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 607 catttgacctcttgctccaggcttcctgggctcaggaccctttagccttcttcctgccag 548
Query: 241 atttgagggacctttatcttccttgaatttgagcaatggcaggcattggccttcctgatc 300
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 atttgagggaacttcatcttccttgaatttgagcaatggcaggcattggccttcctgatc 488
Query: 301 ccaatcccctgagcacatcttagcttccatagcaacctgtcttatttaggatgctttttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ccaatcccctgagcacatcttagcttccatagcaacctgtcttatttaggatgctttttg 428
Query: 361 atcacgtggcttacttctccacaggagaaagcttcactcacatcttgtatttcattttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atcacgtggcttacttctccacaggagaaagcttcactcacatcttgtatttcattttaa 368
Query: 421 aaataaacctccaagaggcagtagatgcaggagtccatgtcattatttctccctatgtca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaataaacctccaagaggcagtagatgcaggagtccatgtcattatttctccctatgtca 308
Query: 481 ccaatcttatccacggggcctgaggagaatgtcagaggagatggcatttggactgcttct 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccaatcttatccacagggcctgaggagaatgtcagaggagatggcatttggactgcttct 248
Query: 541 tgagacagaagaagacaaggaagttgaggaggcaccacaggagcagg 587
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgagacagaagaagacaaggaagttgaggaggcaccacaggagcagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 982
Length adjustment: 10
Effective length of query: 577
Effective length of database: 972
Effective search space: 560844
Effective search space used: 560844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
