BAC Information

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BAC

Clone NameMSMg01-452D01
Chromosome2 (Build37)
Map Location 106,703,628 - 106,757,242
singlet/doubletdoublet
Overlap genenone
Upstream geneElp4, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15, C130023O10Rik
Downstream geneLOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452D01.T7 (MSMg01no452_d01.b1)MSMg01-452D01.TJ (MSMg01no452_d01.g1)
ACCAG539500AG539501
length757756
length of high quality
(start - end)		636 (46 - 681)611 (76 - 686)
definitionCHROMAT_FILE: MSMg01no452_d01.b1 PHD_FILE: MSMg01no452_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:41 2005CHROMAT_FILE: MSMg01no452_d01.g1 PHD_FILE: MSMg01no452_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,703,628 - 106,704,256)(106,756,732 - 106,757,242)
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGTGTGAAGGAAGTTGTTTGTGCTACTTACTGTCTGCTATTAA
TAGTCTCAGCAAGATGTTATCTGAGGTACTCATGACACAGTGAAGTGGTT
TTCCTTCAAGGAAACACACCCACGAGGTAATAATGTTAATCTCTATGGAT
TCATAGTGTTCCCTTTTCTTCATAGCTTTGTGTACCCTAGTTTGGTTTTT
GCTAGGTACTCACTCTCATCTGATCCTCTTCCTAGTCTCTCCAGCCACTG
CCCACACCCCAGCTACCCTGTCTTCACAGAGACGAAATATCCATGCCTCC
TGCCCTGCCAAGTAGAACAGGAATCGGTCCCTTCCTGCCCAGCCATTTCT
AACAGTAAATGTACCTAACGGAGCTGTGGGATGGATTTCCACAGACTGTG
GTGCAGCCTTTCGTCCCACCTGGCTTCTCCATGCCCCATCCTGCTGAGGT
GTATGGATTCCATTTTAGGCCATAATCATCGAGATAGCTGACTTTTGCTA
TAATTGATGTCAGTGTTTTATAGATTTTCTGCATTAAGCAGAGGACTAAG
TGGCTTTTACTTTAAAACAAGTCAATTAGCCCAAGCTTGCTGGATGCCAC
CATAAGGTCACGTTGTCCATTGCTAAAGAGGATTGGAGAAGCTACTGGGT
ATTCCAAATCTTTGGTTGCCAGGAACCAGCAAGGGTTAAGAGTGGTGTCT
CTAAGCA

CCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCAGATTTTGTGTTGTAGAATGCA
CAGAGTCACAGGTCACTGAATCTTGGGTGCTTTGATCCTGGGCCTCCTAC
CTTCTATGTTTATGGATTTTTTTTTTTTGACGACATATTAGTCAACATCA
CCATCTTTGGAGAGACTGAAAAGCTTTCAGATTATGTTAGCTCTTTTAGA
CCCCAACCACTGAGGGGTAGTAGTATCTGTCAGTCTAGGAATTCTATCCC
CCCAATACAAATGCACACTTTTTAAACAATAAACACATTGAGAGCTCTAA
GATTGGCATCCATAGTGCATCTCTGAACAGGTTTATGCTACCTTCTTCTG
AGGCAAGCTCTTAAGAGAGCCCAGGCTGGCTTCTAAATCCGTAGGTGGCT
GGAGATGACCTTGAACTTCTGATCCCAGCCTTCCAGGTCCTGACGGCTGG
AATTACAGGCATTCAGCACATTACCTGTTTTGTGCGGTATTAAGGATCAA
ACCCACGGCTGTCTCACACTAAGCAAGCATTTTAGCTACCGAGCTACATT
CTTGATACCAAAAGTAAATATTTATAATTACCTGGGCCTAGAAATTTACT
TTATTTATGAATTATGTTTTACATTTATATACACACAGCTTAGCCAGAAA
GCAAATATTATGTAAAGTGAGCGAAATCTGCACTTCATATTTTTCTCTGC
ATCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_d01.b1 MSMg01no452_d01.b1 CHROMAT_FILE:
MSMg01no452_d01.b1 PHD_FILE: MSMg01no452_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:41 2005
         (636 letters)



>mm_chr2_106703424_106704456
          Length = 1033

 Score = 1152 bits (596), Expect = 0.0
 Identities = 622/632 (98%), Gaps = 3/632 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagtgtgaaggaagttgtttgtgctacttactgtctgctattaatagtctcag 64
           ||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattctcagtgtgaaggaagttatatgtgctatttactgtctgctattaatagtctcag 264

                                                                       
Query: 65  caagatgttatctgaggtactcatgacacagtgaagtggttttccttcaaggaaacacac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caagatgttatctgaggtactcatgacacagtgaagtggttttccttcaaggaaacacac 324

                                                                       
Query: 125 ccacgaggtaataatgttaatctctatggattcatagtgttcccttttcttcatagcttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccacgaggtaataatgttaatctctatggattcatagtgttcccttttcttcatagcttt 384

                                                                       
Query: 185 gtgtaccctagtttggtttttgctaggtactcactctcatctgatcctcttcctagtctc 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtaccctagcttggtttttgctaggtactcactctcatctgatcctcttcctagtctc 444

                                                                       
Query: 245 tccagccactgcccacaccccagctaccctgtcttcacagagacgaaatatccatgcctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 tccagccactgcccacaccccagctaccctgtcttcacagagacgaaatattcatgcctc 504

                                                                       
Query: 305 ctgccctgccaagtagaacaggaatcggtcccttcctgcccagccatttctaacagtaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgccctgccaagtagaacaggaatcggtcccttcctgcccagccatttctaacagtaaa 564

                                                                       
Query: 365 tgtacctaacggagctgtgggatggatttccacagactgtggtgcagcctttcgtcccac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtacctaacggagctgtgggatggatttccacagactgtggtgcagcctttcgtcccac 624

                                                                       
Query: 425 ctggcttctccatgccccatcctgctgaggtgtatggattccattttaggccataatcat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 625 ctggcttctccatgccccatcctgctgaggtgtatggattccattttaggccataatc-- 682

                                                                       
Query: 485 cgagatagctgacttttgctataattgatgtcagtgttttatagattttctgcattaagc 544
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 -gagatagctgacttttgctataattgatgtcagtgttttatagattttctgcattaagc 741

                                                                       
Query: 545 agaggactaagtggcttttactttaaaacaagtcaattagcccaagcttgctggatgcca 604
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 742 agaggactaagtggcttttactttaaaaccagtcaattagcccaagcttgctggatgcca 801

                                           
Query: 605 ccataaggtcacgttgtccattgctaaagagg 636
           |||||||||||| |||||||||||||||||||
Sbjct: 802 ccataaggtcacattgtccattgctaaagagg 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1033
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1023
Effective search space:   640398
Effective search space used:   640398
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no452_d01.g1 MSMg01no452_d01.g1 CHROMAT_FILE:
MSMg01no452_d01.g1 PHD_FILE: MSMg01no452_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:41 2005
         (611 letters)



>mm_chr2_106756732_106757739
          Length = 1008

 Score =  878 bits (454), Expect = 0.0
 Identities = 498/514 (96%), Gaps = 3/514 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcagattttgtgttgtagaatgcacagagtcacaggtcactgaatcttgggtgctttga 60
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 511 atcagattttgtgttgtagaatgcacagaatcacaggccactgaatcttgggtgctttga 452

                                                                       
Query: 61  tcctgggcctcctaccttctatgtttatggattttttttttttgacgacatattagtcaa 120
           |||||| ||||||||||||| ||||||||||   |||||||||||| |||||||||||||
Sbjct: 451 tcctggacctcctaccttctttgtttatgga---tttttttttgacaacatattagtcaa 395

                                                                       
Query: 121 catcaccatctttggagagactgaaaagctttcagattatgttagctcttttagacccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 catcaccatctttggagagactgaaaagctttcagattatgttagctcttttagacccca 335

                                                                       
Query: 181 accactgaggggtagtagtatctgtcagtctaggaattctatccccccaatacaaatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 accactgaggggtagtagtatctgtcagtctaggaattctatccccccaatacaaatgca 275

                                                                       
Query: 241 cactttttaaacaataaacacattgagagctctaagattggcatccatagtgcatctctg 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cactttttatacaataaacacattgagagctctaagattggcatccatagtgcatctctg 215

                                                                       
Query: 301 aacaggtttatgctaccttcttctgaggcaagctcttaagagagcccaggctggcttcta 360
           |||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aacaggttcatgctttcttcttctgaggcaagctcttaagagagcccaggctggcttcta 155

                                                                       
Query: 361 aatccgtaggtggctggagatgaccttgaacttctgatcccagccttccaggtcctgacg 420
           |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 154 aatctgtatgtggctggagatgaccttgaacttctgatcccagccttccaggtcctgaag 95

                                                                       
Query: 421 gctggaattacaggcattcagcacattacctgttttgtgcggtattaaggatcaaaccca 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 94  gctggaattacaggcattcagcacattacctgttttgtgcagtattaaggatcaaaccca 35

                                             
Query: 481 cggctgtctcacactaagcaagcattttagctac 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 34  cggctgtctcacactaagcaagcattttagctac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1008
Length adjustment: 10
Effective length of query: 601
Effective length of database: 998
Effective search space:   599798
Effective search space used:   599798
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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