BAC Information

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BAC

Clone NameMSMg01-452F06
Chromosome2 (Build37)
Map Location 15,697,049 - 15,697,748
singlet/doubletsinglet
Overlap genenone
Upstream geneCacnb2, LOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588
Downstream geneLOC625457, Plxdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452F06.T7 (MSMg01no452_f06.b1)MSMg01-452F06.TJ (MSMg01no452_f06.g1)
ACCAG539606AG539607
length758806
length of high quality
(start - end)
705 (51 - 755)282 (81 - 362)
definitionCHROMAT_FILE: MSMg01no452_f06.b1 PHD_FILE: MSMg01no452_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:51 2005CHROMAT_FILE: MSMg01no452_f06.g1 PHD_FILE: MSMg01no452_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTTAGCTCTGTACCACATTTTTAATGGGGTTATTTG
AATTTCTGGAGTTCACCTTCTTGAGCTCTTTATATATATCAAAGCTGACC
TTTTAACTCAGGAATTTGCCTGCATGTGTATCTGCCTGTATTTGTATCTT
TCCAGCAAGATGGCTTGCTCATAGTATATCTACCTTTGTTCCTCTAAATT
TGTGAAGCCCCTCATAATTCATATTCATCCTTATATTTTTGCATAGTTGA
GAAATTATTTATTTTCAAATTCATGCATTTTATGAGGTCTTTTCCACAGA
CTTAAGGTCTGTCCTGAGAGTCCCAACGTTTAACATTTTTGCTGAGATAT
GAGCCACATCTTTGCCTCCTGGTCAGGGGCTGGCTGATTATGGTGGAGTC
TTTGGTGTTATCAGGGAGAATATTCCTTAAAGGAGGAATGTAAGAAATGT
AGATTTCTATACAAACAAGCACTATGCTGACAGCAGCCTTTGACACTCGT
GGAAGCTCACAATGATCTCTGTCCCAAGGGCAGGAAGCAGGTCACTCTGT
CCCCACCAAGGCCACAGCTGGCTTGGCAGGGGGTAATGTGTGAAATACAT
GTACATGTATGAAAATGTCATAATGAGTCCTATTCTGTATAATTAATATC
TGTTAATAAAATGAGTTAAAGTTTTAAAAGAAGCAAGAGATTTGAACAAA
TCCTTCCN
TTCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGGTTAACAAGAAGAA
GGGCCCAAGTAAGGATGCTTCAATCCCACTTGGAAGGGAGACAAAAACAA
TCACAAGAGGCAGAGGGTGGGCAGGAACTGGGTGGGAGAGGGGAGAGAGA
AGGGAAAAGGGGAACATGATAAGGTATGTGGGGAGGAAAAGGAGAGAAAC
ACTGAGGGACATCAGAATGAATGGGAATATGCAACCTTGTGTAGTGGGAG
GTAGGAAGTGGGAGGTGGGGGAAACCCTATAGAAAATAACAGAGACCTGG
GAGATGAGAGATTCTCATGACTCCCAGAGAGGGACCCTTGGTGAAGTGTT
CATGATTAGGGAGAGGGTAGATCTCCCCCCTCNCACACGACTCTGATCTC
AGAATTGGGTTCTGTCCAATCCGATTTGTGGTTGCCCAGATATGCTTATC
TCTCTCGATTACCCACGGTTTTTTCTGTTGTCGGTGCTCTTTTTTCGGGG
TATCCTCGCCCTGGTTTTGGGTGCCTTTGTCATCTTTCCTTGATCTCTTT
ATTATTTGGTGCGGTGCCTATCAGTTATTCCATCTTTTTCTGTTCTTCCC
TTCTTCATATGGCTCCCCGTTTCCCCTATTCTTCTTTTTTCTTTCTCACT
TCCCTTATTTCTATATTTTTTACTCTGTTCCTCGTTACTTCTCTGGTTTT
TTGTTTTTGTCCGCCTTTTATCTGTGCTTGTTATTTTTTCTATTATTCAT
TACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_f06.b1 MSMg01no452_f06.b1 CHROMAT_FILE:
MSMg01no452_f06.b1 PHD_FILE: MSMg01no452_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:51 2005
         (705 letters)



>mm_chr2_15696844_15697948
          Length = 1105

 Score = 1286 bits (665), Expect = 0.0
 Identities = 692/701 (98%), Gaps = 1/701 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtttagctctgtaccacatttttaatggggttatttgaatttctggagttc 64
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttgtttagctctgtaccccatttttaatggggttatttgaatttctggagttc 265

                                                                       
Query: 65  accttcttgagctctttatatatatcaaagctgaccttttaactcaggaatttgcctgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 accttcttgagctctttatatatatcaaagctgaccttttaactcaggaatttgcctgca 325

                                                                       
Query: 125 tgtgtatctgcctgtatttgtatctttccagcaagatggcttgctcatagtatatctacc 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cgtgtatctgcctgtatttgtatctttccagcaagatggcttgctcatagtatatctacc 385

                                                                       
Query: 185 tttgttcctctaaatttgtgaagcccctcataattcatattcatccttatatttttgcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 386 tttgttcctctaaatttgtgaagcccctcataattcatattcatccttatattttagcat 445

                                                                       
Query: 245 agttgagaaattatttattttcaaattcatgcattttatgaggtcttttccacagactta 304
           |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 446 agttgagaaattatatattttcaaattcatgtattttatgaggtcttttccacagactta 505

                                                                       
Query: 305 aggtctgtcctgagagtcccaacgtttaacatttttgctgagatatgagccacatctttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aggtctgtcctgagagtcccaacgtttaacatttttgctgagatatgagccacatctttg 565

                                                                       
Query: 365 cctcctggtcaggggctggctgattatggtggagtctttggtgttatcagggagaatatt 424
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 566 cctcctggtcaggggctggctgattatggtggagtctttaatgttatcagggagaatatt 625

                                                                       
Query: 425 ccttaaaggaggaatgtaagaaatgtagatttctatacaaacaagcactatgctgacagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccttaaaggaggaatgtaagaaatgtagatttctatacaaacaagcactatgctgacagc 685

                                                                       
Query: 485 agcctttgacactcgtggaagctcacaatgatctctgtcccaagggcaggaagcaggtca 544
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 686 agcctttgacactcgtggaagctcacaatgatctccgtcccaagggcaggaagcaggtca 745

                                                                       
Query: 545 ctctgtccccaccaaggccacagctggcttggcagggggtaatgtgtgaaatacatgtac 604
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 746 ctctgtccccaccaaggccacagctggcttggcagggg-taatgtgtgaaatacatgtac 804

                                                                       
Query: 605 atgtatgaaaatgtcataatgagtcctattctgtataattaatatctgttaataaaatga 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atgtatgaaaatgtcataatgagtcctattctgtataattaatatctgttaataaaatga 864

                                                    
Query: 665 gttaaagttttaaaagaagcaagagatttgaacaaatcctt 705
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gttaaagttttaaaagaagcaagagatttgaacaaatcctt 905


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space:   761025
Effective search space used:   761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)