BAC Information

Click to search

BAC

Clone NameMSMg01-452H06
Chromosome2 (Build37)
Map Location 32,828,058 - 32,957,323
singlet/doubletdoublet
Overlap geneSlc2a8, Garnl3
Upstream gene2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65
Downstream geneRalgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452H06.T7 (MSMg01no452_h06.b1)MSMg01-452H06.TJ (MSMg01no452_h06.g1)
ACCAG539701AG539702
length757758
length of high quality
(start - end)
663 (50 - 712)597 (80 - 676)
definitionCHROMAT_FILE: MSMg01no452_h06.b1 PHD_FILE: MSMg01no452_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:00 2005CHROMAT_FILE: MSMg01no452_h06.g1 PHD_FILE: MSMg01no452_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,828,058 - 32,828,716)(32,956,727 - 32,957,323)
sequence
NNNACCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTACATATTGAACTCCAGGACAGCTAGGGCTACACAGCGAGA
CTCTGTCTCAAAACAACCCCACACCCTCACAAGACCTCAAGTGGATTCCA
CCAACAGCTAACAGTGTGGTGAGGGCTGTTTGATAGGATGGTGAGAGTCA
CAATGTTTCTTAAGGGAAAAATAGTCTAATCTTATGGATCAGTACAGCCA
AGCCAAGCCTGCTGCATTCAATGACTGACAGTGGAGAGTGGGCCTCGGGG
CAGCCTTGTGATGGAGCCACAGTGTCACTTGGGTAACTTTACCTCTGGAA
AGGGGCAGCTTTTCTGTGCAAGTAAGGCACCCAGCCGATGACTGCCTGCA
GAACGCATCATGTTTACGTATCTGTGCTCCAATTTACTCCGCTGAGTGTG
TACTGCCCCATGAAACAAGGGACCTGCAAAAGACTTCTGGCTCCACTGAA
GTTGAACAGTAAGAGGCTTTTTATTTCCTGAAACTCAACAAGATATGGTG
GCTAATGACCCAGGACACGGAGCCCAGGAAAGAGCCAGAAAGAACCTGTA
AGTGATGGGTAAGCTGGCTGGCCCCAGGGTGACCCCGGAGAGTCTCTGCG
CAGCTCTGAGGAGGGCTTGGTTGGCAAGAACATTCTCTCTTCTACCTGGG
CTTACCTGACCTTGTTTCTGAGCCCATATGGCTAAGTCCCTTTCTGATCT
CCCAGTC
NNNTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAGGTAGGAGTGGGGAAT
CTGGGTGAAGGTGACAAATGCATCAGAAGTCTTAGCAGTGAGAACTGGTT
GACTATGTTGACTAGGAAGCCATGACACATTTCTGAGAAGTAAGGCATGC
TGGGAATACAGGGGTGCAACTTTCTGGGGTTCTTCACTCTCCCAATCTAT
GACTAATCAGACCATGAAGTAAAATTTCTTTACAGAGGTGTTATAGCACA
ATCTATGAGGAGACAACAAAGGAAGTTGTCAGAAGGATGGCTGCACTTCC
TAAAAGGATGTCAGTCAGGAGGGATGAAGTTGTACTTGGACGCCCCTCCT
GTTTCTAGCTCTTGTTTGTCAGGTAGTCTTCCCCACTGGGGTAATGGTGC
ATGCGCATCTAAGAAGTCTGTAATTCAGACTCACTTCTCTCCCAGGGCTC
AGTGACAGTTTACGTTTGGTCTTTTGAGGAAGATTACCATGTATTTGAAA
GTTTGTCACCAATGCATACTACAGAGCAATGGTTTTGTTTTTGTTTTTAA
TGCAAGCATTAAAAACAAAAAGCTTTCAAAAGCATTGAAAGACTACACAT
GTTCCTAATGAAAAGCCACTTTATCTTNAAATGCAGTGCTGGGTGATAAG
CTTTTGGTTTAAATTAGGTACATTCTATTCCCCTTCTTTTGTGTTTTTAT
GGGAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_h06.b1 MSMg01no452_h06.b1 CHROMAT_FILE:
MSMg01no452_h06.b1 PHD_FILE: MSMg01no452_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:00 2005
         (663 letters)



>mm_chr2_32827854_32828916
          Length = 1063

 Score = 1251 bits (647), Expect = 0.0
 Identities = 656/659 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacatattgaactccaggacagctagggctacacagcgagactctgtctcaaaa 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacatagtgaactccaggacagctagggctacacagcgagactctgtctcaaaa 264

                                                                       
Query: 65  caaccccacaccctcacaagacctcaagtggattccaccaacagctaacagtgtggtgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaccccacaccctcacaagacctcaagtggattccaccaacagctaacagtgtggtgag 324

                                                                       
Query: 125 ggctgtttgataggatggtgagagtcacaatgtttcttaagggaaaaatagtctaatctt 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agctgtttgataggatggtgagagtcacaatgtttcttaagggaaaaatagtctaatctt 384

                                                                       
Query: 185 atggatcagtacagccaagccaagcctgctgcattcaatgactgacagtggagagtgggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atggatcagtacagccaagccaagcctgctgcattcaatgactgacagtggagagtgggc 444

                                                                       
Query: 245 ctcggggcagccttgtgatggagccacagtgtcacttgggtaactttacctctggaaagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcggggcagccttgtgatggagccacagtgtcacttgggtaactttacctctggaaagg 504

                                                                       
Query: 305 ggcagcttttctgtgcaagtaaggcacccagccgatgactgcctgcagaacgcatcatgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggcagcttttctgtgcaagtaaggcacccagccgatgactgcctgcagaacgcatcatgt 564

                                                                       
Query: 365 ttacgtatctgtgctccaatttactccgctgagtgtgtactgccccatgaaacaagggac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttacgtatctgtgctccaatttactccgctgagtgtgtactgccccatgaaacaagggac 624

                                                                       
Query: 425 ctgcaaaagacttctggctccactgaagttgaacagtaagaggctttttatttcctgaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgcaaaagacttctggctccactgaagttgaacagtaagaggctttttatttcctgaaa 684

                                                                       
Query: 485 ctcaacaagatatggtggctaatgacccaggacacggagcccaggaaagagccagaaaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctcaacaagatatggtggctaatgacccaggacacggagcccaggaaagagccagaaaga 744

                                                                       
Query: 545 acctgtaagtgatgggtaagctggctggccccagggtgaccccggagagtctctgcgcag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acctgtaagtgatgggtaagctggctggccccagggtgaccccggagagtctctgcgcag 804

                                                                      
Query: 605 ctctgaggagggcttggttggcaagaacattctctcttctacctgggcttacctgacct 663
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 805 ctctgaggagggcttggttggcaagaacattctctcttctacctgggctcacctgacct 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no452_h06.g1 MSMg01no452_h06.g1 CHROMAT_FILE:
MSMg01no452_h06.g1 PHD_FILE: MSMg01no452_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:01 2005
         (597 letters)



>mm_chr2_32956527_32957523
          Length = 997

 Score = 1139 bits (589), Expect = 0.0
 Identities = 595/597 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagaggtaggagtggggaatctgggtgaaggtgacaaatgcatcagaagtcttagcagt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 797 ctagaggtaggagtggggaatctgggtgaaggtgaaaaatgcatcagaagtcttagcagt 738

                                                                       
Query: 61  gagaactggttgactatgttgactaggaagccatgacacatttctgagaagtaaggcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gagaactggttgactatgttgactaggaagccatgacacatttctgagaagtaaggcatg 678

                                                                       
Query: 121 ctgggaatacaggggtgcaactttctggggttcttcactctcccaatctatgactaatca 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 677 ctgggaatacaggggtgcaactttctgggattcttcactctcccaatctatgactaatca 618

                                                                       
Query: 181 gaccatgaagtaaaatttctttacagaggtgttatagcacaatctatgaggagacaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaccatgaagtaaaatttctttacagaggtgttatagcacaatctatgaggagacaacaa 558

                                                                       
Query: 241 aggaagttgtcagaaggatggctgcacttcctaaaaggatgtcagtcaggagggatgaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aggaagttgtcagaaggatggctgcacttcctaaaaggatgtcagtcaggagggatgaag 498

                                                                       
Query: 301 ttgtacttggacgcccctcctgtttctagctcttgtttgtcaggtagtcttccccactgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttgtacttggacgcccctcctgtttctagctcttgtttgtcaggtagtcttccccactgg 438

                                                                       
Query: 361 ggtaatggtgcatgcgcatctaagaagtctgtaattcagactcacttctctcccagggct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggtaatggtgcatgcgcatctaagaagtctgtaattcagactcacttctctcccagggct 378

                                                                       
Query: 421 cagtgacagtttacgtttggtcttttgaggaagattaccatgtatttgaaagtttgtcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cagtgacagtttacgtttggtcttttgaggaagattaccatgtatttgaaagtttgtcac 318

                                                                       
Query: 481 caatgcatactacagagcaatggttttgtttttgtttttaatgcaagcattaaaaacaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 caatgcatactacagagcaatggttttgtttttgtttttaatgcaagcattaaaaacaaa 258

                                                                    
Query: 541 aagctttcaaaagcattgaaagactacacatgttcctaatgaaaagccactttatct 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aagctttcaaaagcattgaaagactacacatgttcctaatgaaaagccactttatct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)