BAC Information

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BAC

Clone NameMSMg01-452J19
Chromosome2 (Build37)
Map Location 87,003,495 - 87,004,095
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111
Downstream geneOlfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452J19.T7 (MSMg01no452_j19.b1)MSMg01-452J19.TJ (MSMg01no452_j19.g1)
ACCAG539823AG539824
length729741
length of high quality
(start - end)		676 (54 - 729)611 (80 - 690)
definitionCHROMAT_FILE: MSMg01no452_j19.b1 PHD_FILE: MSMg01no452_j19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:13 2005CHROMAT_FILE: MSMg01no452_j19.g1 PHD_FILE: MSMg01no452_j19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTGCTTCTGTTATGGCTCACCTCAGAACAAATGAAA
ATTGAACCAAATTTGGGCATTTGGGGTTTATGTTTTTATTTTATTATTAT
TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTT
AATGAAGTAAATTGTTCACATGTATACACTGAGAGACAGAGGACAGTCAT
ACATTTTGATATTTGAGCCATTCCTAAAGAATCTAGAAAGCTTGCCAGTG
ACAAATCTTGGAGCCTCCTGAGCTGACTGTGGCTCTGCCTGGGGCATGGG
TGGGAGAGGCTTGCCACTTGTGATTGGCGTCTCATTAGAGCTGTGCTGGT
GGTGTGTGCTGTCTAACCTCCAATGCTGTGCGTAGAGAGAATGAGTTTGT
AGCTGGGAGAAACTAACCCTCGGTTTCCCTTACCTGGCATATACATACAT
ACATACATACATACATACATACATACATACATACATATATATATATATAT
ACCAGGTTAAAATATATATCTTAAAATATATATTAATATATATATAATCT
ATTTTTATTAGAAGTTTTTCTGCTCTTTCTTACATTAAAAAAAAATTCAT
TTCTTGGCTAATTTCAAAAGAATCCCAACACTGCTGTATAGAGAACTAGC
TTGCACATTTTAAGTCTGTGAAATTCTGG

NAAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAAGTAACACATTCACAAAGAAACTCACACAATATGTACTCACTGA
TAAGTGGATATTAGCTCCAAACCTAGGATACCCAAGATATAAGATATAAT
TTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_j19.b1 MSMg01no452_j19.b1 CHROMAT_FILE:
MSMg01no452_j19.b1 PHD_FILE: MSMg01no452_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:13 2005
         (676 letters)



>mm_chr2_87003279_87004354
          Length = 1076

 Score =  534 bits (276), Expect = e-155
 Identities = 524/720 (72%), Gaps = 184/720 (25%)
 Strand = Plus / Minus

                                                                       
Query: 21  ttatggctcacctcagaacaaatgaaaattgaaccaaatttgggcatttggggtttatgt 80
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 817 ttatggctcacctcagaacaaatgaaaattgaaccaaatttgggcatttgggatttatgt 758

                                                                       
Query: 81  ttttattttattattattattattattattattattattattattattattattattatt 140
           |||||||                                          || ||||||||
Sbjct: 757 ttttatt------------------------------------------ttgttattatt 740

                                                                       
Query: 141 attatttaatgaagta-aattgttcacatgtatacactgagagacagaggacagtcatac 199
           ||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 739 attatttaatgaagtaggattgttcacatgtgtacactgagagacagaggacagtcatcc 680

                                                                       
Query: 200 attttgatatttgagccattc------------------------ctaaagaatctagaa 235
           |||||||||||||||||||||                        |||||||||||||||
Sbjct: 679 attttgatatttgagccattcctaaagattaagggttttctaaaactaaagaatctagaa 620

                                                                       
Query: 236 agcttgccagtgacaaatcttggagcctcctgagctgactgtggctctgcctggggcatg 295
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 619 agcttgccagtgaccaatcttggagcctcctgagctgactgtggctctgcctggggca-- 562

                                                                       
Query: 296 ggtggg----agaggcttgccacttgtgattggcgtctcattagagctgtgctggtggtg 351
             ||||    ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 --tgggcaaaagaggcttgccacttgtgattggcgtctcattagagctgtgttggtggtg 504

                                                                       
Query: 352 tgtgctgtctaacctccaatgctgtgcgtagagagaatgagtttgtagctgggagaaact 411
           |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 503 tgtgctgtctaacctccaatgctgtgcgtagagagaatgaatttgtggctgggagaaact 444

                                                                       
Query: 412 aaccctcggtttcccttacctggcatatacatacatacatacatacatacatacatacat 471
           |||||||||||||||||||||||                                     
Sbjct: 443 aaccctcggtttcccttacctgg------------------------------------- 421

                                                                       
Query: 472 acatacatacatatatatatatatataccaggttaaaatatatatcttaaaatatatatt 531
                      ||||||||| |   |||||||| ||||||||   |     |||||||| 
Sbjct: 420 -----------tatatatat-t---taccaggt-aaaatata---c-----atatatat- 386

                                                                       
Query: 532 aatatatatataatctatttttattagaagtttttctgctctttcttacattaaaaaaaa 591
           |||||||           ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 aatatat-----------ttttattagaagtttttcttctctttcttacattaaaaaaaa 337

                                                                       
Query: 592 a------------------------------------ttcatttcttggctaatttcaaa 615
           |                                    ||||||||| |||||||||||||
Sbjct: 336 aaagacccaagcatgcatctttcatgtgtgtaaataattcatttctgggctaatttcaaa 277

                                                                       
Query: 616 agaatcccaacactgctgtatagagaactagcttgcacattttaagtctgtgaaattctg 675
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 276 agaatcccaacactgctgtatagagaactagcttgcacattttaggtctgtgaaattctg 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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