Query= MSMg01no452_l12.b1 MSMg01no452_l12.b1 CHROMAT_FILE:
MSMg01no452_l12.b1 PHD_FILE: MSMg01no452_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:22 2005
(273 letters)
>mm_chr2_28579511_28580188
Length = 678
Score = 480 bits (248), Expect = e-140
Identities = 265/274 (96%), Gaps = 7/274 (2%)
Strand = Plus / Plus
Query: 4 ggaattcttcacttcctagagcctggggcactcagtgaacagtgcactgggcataggtcc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcacttcctagagcctggggcactcagtgaacagtgcactgggcataggtcc 263
Query: 64 cctccccctccccccgcagccc------cccccccccgcattacaaacgtatcagcttaa 117
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 264 cctccccctccccccgcaaccctccccccccccccccgcattacaaacgtatcagcttaa 323
Query: 118 aacaagccatgtagttgtagtatggcgtgtctcagtgagtcggatcttatctcagccacc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacaagccatgtagttgtagtatggcgtgtctcagtgagtcggatcttatctcagccacc 383
Query: 178 tgcatcctttttttttgggtctacaataaagaagctactgggcacgaagcttgtgtccac 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcatcctttttttt-gggtctacaataaagaagctactgggcacgaagcttgtgtccac 442
Query: 238 ctctgctgggtctgatccacctctcagatacctg 271
||||||||||||||| ||||||||||||||||||
Sbjct: 443 ctctgctgggtctgagccacctctcagatacctg 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 678
Length adjustment: 9
Effective length of query: 264
Effective length of database: 669
Effective search space: 176616
Effective search space used: 176616
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no452_l12.g1 MSMg01no452_l12.g1 CHROMAT_FILE:
MSMg01no452_l12.g1 PHD_FILE: MSMg01no452_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:22 2005
(587 letters)
>mm_chr2_28780337_28781323
Length = 987
Score = 982 bits (508), Expect = 0.0
Identities = 545/566 (96%), Gaps = 16/566 (2%)
Strand = Plus / Minus
Query: 1 tctgtagcacacga-ccccactccagtttcttcactgccttactgtctgtcttccctcca 59
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tctgtagcacacgacccccactccagtttcttcactgccttactgtctgtcttccctcca 498
Query: 60 gagggaccctacccctgccatcagggatctcagacctcagagccaaatcccagggctggg 119
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 497 gagggaccctacccctgccatcagggatctcagacctcagagccgaatcccagggctggg 438
Query: 120 cacctggtaggtctggtaggtgttcagggctatctgcatagtacccactgattggagatc 179
||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 437 cac---------ctggtaggtgttgagggctatctgcatagtacccactgattggagatc 387
Query: 180 ccctgggcctggatggttgctgaaacaccaatctaaataggtctatacatcatctataca 239
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctgtgggcctggatggttgctgaaacaccaatctaaataggtctatacatcatctataca 327
Query: 240 cacatataagcagtacatatacatgcacacatatactcacatgca------acacacaca 293
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 326 cacatataagcagtacatatacatgcacacatatactcacatgcaacacacacacacaca 267
Query: 294 cacctgtactgtagcccattagcagccacacactgtcccccttgggaacctggctcagtg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cacctgtactgtagcccattagcagccacacactgtcccccttgggaacctggctcagtg 207
Query: 354 aggctatgatgaaccctacatcacctatggacttgaaccctgttctcattcccagagaga 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aggctatgatgaaccctacatcacctatggacttgaaccctgttctcattcccagagaga 147
Query: 414 aacaaatctcctgactcatttggctaaagccatcctgagtccctgagcctggtggcgatg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 aacaaatctcctgactcatttggctaaagccatcctgagtccctgagcctggtggcgatg 87
Query: 474 cagaggtgagccagaggggattcactacagcgctagcaaatcaggtcactgtggctaaaa 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 86 cagaggtgagccagaggggattcactacagcgctagcaaatcaggtcactgtggctaaga 27
Query: 534 gtgtgaggctggcttgatctggagca 559
||||||||||||||||||||||||||
Sbjct: 26 gtgtgaggctggcttgatctggagca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
