Query= MSMg01no452_p19.b1 MSMg01no452_p19.b1 CHROMAT_FILE:
MSMg01no452_p19.b1 PHD_FILE: MSMg01no452_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:43 2005
(674 letters)
>mm_chr2_150010011_150011085
Length = 1075
Score = 1118 bits (578), Expect = 0.0
Identities = 650/674 (96%), Gaps = 5/674 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgtaaatcagatttttgggaccgcaaagaggaactaaatagtcaaggttaacc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 ggaattctgtaaatcagatttttgggaccgcaaagaggaactaaatagtcaaggttaacc 956
Query: 64 cacagaatagagatggatgagagaatctcagacaatagaaggaatggttacacaggacaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 cacagaatagagatggatgagagaatctcagacaatagaaggaatggttacacaggacaa 896
Query: 124 taacaattttaaatctaaaagttgcaaaaatttataacaggaaagttgattccaaggctg 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 taacaattttaaatctaaaagttgcaaaaatttataacaggaaagttgattccaaggcta 836
Query: 184 tacgtcatgtgggaaaactcagattgcgctatagtattttgaagaaatagtatacacatt 243
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tatgtcatgtgggaaaactcagattgcgctatagtattttgaagaaatagtatacacatt 776
Query: 244 ggcacagtgtaaattctatacttataacaaagatagcataatcaagaacgtgtacaacaa 303
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||
Sbjct: 775 ggcacagtgtaaattctatacttataacagagatagcataatcaagaatgtgtacaa-aa 717
Query: 304 -ttgtgaaagaaagt-ggggaagcagagaaaaagccaaaaacataagcctaaaatgctat 361
||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 716 tttgtgaaagaatgtgggggaagcagagaaaaggccaaaaacataagcctaaaatgctat 657
Query: 362 tcaagttttcatcaaaatacctaatgaaagtactccaggaaaaattgaacttgaccaata 421
||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||
Sbjct: 656 tcaagttttcatcaaaatatctaatggaactactccaggaaaaattgaacttgaccaatg 597
Query: 422 ttacctgtgattgtatgtataaagaaattaaataaaccgagaattcatgactccgataac 481
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 596 ttacctgtgattgtatgtataaagaaattaaataaaccgagaattcatggctctgataac 537
Query: 482 aact-actccaagttacccctaaagtgttatatatctgttcctccagcaactgctgatgt 540
|| | |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 536 aa-taactcaaagttacccctaaagtgttatatatttgttcctccagcaactgctgatgt 478
Query: 541 gtcattcaaactccccatgttccagcgttctctctgtaaataaaggtgatcagaaagatg 600
||||||||||||||||||||||||| ||||||||||||||| ||| |||||| |||||||
Sbjct: 477 gtcattcaaactccccatgttccagagttctctctgtaaatgaagatgatcacaaagatg 418
Query: 601 ggctaatggctctgcaacccctcatgaccccttggaatttcaggtaaaactagccccact 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 417 ggctaatggctctgcaacccctcatgaccccttgggatttcaggtaaaactagccccact 358
Query: 661 gaagcctcacagag 674
||||||||||||||
Sbjct: 357 gaagcctcacagag 344
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1075
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1065
Effective search space: 707160
Effective search space used: 707160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_p19.g1 MSMg01no452_p19.g1 CHROMAT_FILE:
MSMg01no452_p19.g1 PHD_FILE: MSMg01no452_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:43 2005
(679 letters)
>mm_chr2_150516088_150517166
Length = 1079
Score = 1236 bits (639), Expect = 0.0
Identities = 669/679 (98%)
Strand = Plus / Minus
Query: 1 tttgatatcactttcctttgccagaaaggtgcccaaagatccagctctcctaccagagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 tttgatatcactttcctttgccagaaaggtgcccaaagatccagctctcctaccagagtt 820
Query: 61 cctgcagacccccaccatcctgccagttgggcagcaggcagcagtggggttgcttctgtt 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 cctgcagacccacaccatcctgccagttgggcagcaggcagcagtggggttgcttctgtt 760
Query: 121 caggaatagcaggatcctgtaacccctcagagccctagcccagctctttcctcagcctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 caggaatagcaggatcctgtaacccctcagagccctagcccagctctttcctcagcctgg 700
Query: 181 ctctgcctcactattcccatttctctttccttgttccatgagacaagttgacttgtttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ctctgcctcactattcccatttctctttccttgttccatgagacaagttgacttgtttga 640
Query: 241 gtaacctctcatcagtaaaatgggtttatttgataagatcttcctaaaggagttggaaac 300
||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||
Sbjct: 639 gtaacctctcatcagtagaacgggtttatttgataagatcttcctcaaggagttggaaac 580
Query: 301 atctgctctggactatccccaggggatgaaatcctacccccaaccctttggttgctttgt 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 579 atctgctctggactatccccaggggatgaaatcctacccccaaccttttggttgctttgt 520
Query: 361 atttctggcatctacttggagtgtggggagtctgtcatctgggtgatcttccaccctgag 420
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 519 atttctagcatctacttggagtgtggggagtctgtcatctgggtgaccttccaccctgag 460
Query: 421 gtagaatctaggagagcgcaggaccttggctacaggcagtggcgaggtctctggagcctc 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 459 gtagaatctaggagagcgcaggaccttggctacaggcagtggccaggtctctgcagcctc 400
Query: 481 ttctgtttgaggtgatccgggctgagtcacctattctggctacaaaagagtgcactccta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttctgtttgaggtgatccgggctgagtcacctattctggctacaaaagagtgcactccta 340
Query: 541 gtgagtatctttcttagctgcaagccgaaatttagatttacgaaggcacacagctgctaa 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 339 gtgagtatctttcttagctgcaagccgaaatttggatttacgaaggcacacagctgctaa 280
Query: 601 ttggcaagtctctatatttctgatgtcttcccctaaatctagaggtgaattttgagcaac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ttggcaagtctctatatttctgatgtcttcccctaaatctagaggtgaattttgagcaac 220
Query: 661 attcctggcagacctgaaa 679
|||||||||||||||||||
Sbjct: 219 attcctggcagacctgaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
