CGTTCNNTTAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTCCATAGTAGAGATCCTCCAAGGGATGCCTCCT
GGGAGGTATGGCTGGCTTTGAGTCAGCTCATGTGCCTGTAACTAACCCCA
ATAAACTGGAGCTGGACACGGAAGAAGCCTTCCCTGATCTGCCAGTGCCC
ACTCTGTCTGGTTCAGAGTCGTGCAGGGCAATGTCCCAGGACAGCAGTGG
GCAAATCCCCTCAGTTCTAACATCACCACTCCCCGTGAGATGTGAACAAG
ACTCAGAGGCTGATGATCAGAGAGTCACCCAGGGCTGTCACTCGCAGAAA
CCAAAGCCAGTATGGCATGGCTGTTGCGTTTTATGACAAAGATTTGAAAG
TGTCCCTGAAAAGCTCAGGAGAGGAAAGTCTCCGTAGTCACAGAGAGTGA
GCAGGGCCTAGATTCGCCATGTGCTTCCAACCATTTTTATTTGCTTGTTT
GATTTACAAGTGACATTTTATTTTTATAGATTATTGGCTAAAGAGCAAGT
TGACTCATTAGGCAGAGCATATAGAGATAAAGCAGAAAGAGAGAGGGGGA
GAGGGAGAGGGGGAGAGGAAGAGGGAGAGATATNTATATTTTTCTTTTTG
GGGATGTTGTTTTTCACTATTGATTGCTCTATCTCAAGTCTCCCAAAATT
TCTCTGACTTTAATGTATTTT

NTTTATTTCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGGATACAATC
CATAGAACTAAAGAAGGGTAACAAGTCAAAGGGCCCAAGTGAGGATGCTT
CAATCCCACTTGGGAGGGAAAAGAAAGCAATCACAGGAGGAGGTGGGAGG
GAGGGAAGGACCTGGGTCAAAGGGCTACAGGGAGGGAAATATGATCAGGT
ATTGGGGGTTGGGGCAAACAGGACTGAATCCCTGAGCACCAGCAGAAAGA
ATTGAAATAGGAAACCTCAGGAGGTACCAGAGACCTAGGAGGTGAGAGAC
TCTCAGGACTGAAAGGGGGGGACCTTAGATGAAATGCCCTACAGTGGGGA
GAGGGAACTTGTAGAGTCTACCACCAATAGAAAGACAGGTCATCAAGAAT
AGGGGTGGGGTTGCCATCCCACAGTCAAAAACTCTGACCCAGAATTGTTC
CTGTCTAAAAGAACTGCAGGAACAAAAATGGAGAAGAGCCTGAGAGAAAG
GAGGTCCAGTGACAGGCTCAAATTGGGATCTAGTTCAGGGGGAGGAGGCC
CCAAGGCCTGACACTACTATTGATGCTATTGTGTACTTACAGAGAGGAGC
CTGGGATGGCTGCCTTCCAAGAGGGACAACAAGCAGCTGTAATAGTCAGA
TTCAGATATTTACACTTTACCCCAACCAATG

Query= MSMg01no453_b01.b1 MSMg01no453_b01.b1 CHROMAT_FILE:
MSMg01no453_b01.b1 PHD_FILE: MSMg01no453_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:48 2005
         (566 letters)



>mm_chr2_178276101_178277066
          Length = 966

 Score = 1052 bits (544), Expect = 0.0
 Identities = 556/560 (99%), Gaps = 1/560 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttcttccatagtagagatcctccaagggatgcctcctgggaggtatggctggctttgagt 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ttcttccatagtagagatcctccaagggatgcctcctgggaggtatggctggctttgagt 672

                                                                       
Query: 68  cagctcatgtgcctgtaactaaccccaataaactggagctggacacggaagaagccttcc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 cagctcatgtgcctgtaactaaccccaataaactggagctggacacggaagaagccttcc 612

                                                                       
Query: 128 ctgatctgccagtgcccactctgtctggttcagagtcgtgcagggcaatgtcccaggaca 187
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 611 ctgatctgccagtgcccactctgtctggttcagagtcgtgcaggacaatgtcccaggaca 552

                                                                       
Query: 188 gcagtgggcaaatcccctcagttctaacatcaccactccccgtgagatgtgaacaagact 247
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gcagtgggcgaatcccctcagttctaacatcaccactccccgtgagatgtgaacaagact 492

                                                                       
Query: 248 cagaggctgatgatcagagagtcacccagggctgtcactcgcagaaaccaaagccagtat 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cagaggctgatgatcagagagtcacccagggctgtcactcgcagaaaccaaagccagtat 432

                                                                       
Query: 308 ggcatggctgttgcgttttatgacaaagatttgaaagtgtccctgaaaagctcaggagag 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggcatggctgttgcgttttatgacaaagatttgaaagtgtccctgaaaagctcaggagag 372

                                                                       
Query: 368 gaaagtctccgtagtcacagagagtgagcagggcctagattcgccatgtgcttccaacca 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gaaagtctccgtagtcacagagagtgagcagggcctagattcgccatgtgcttccaacca 312

                                                                       
Query: 428 tttttatttgcttgtttgatttacaagtgacattttatttttatagattattggctaaag 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tttttatttgcttgtttgatttacaagtgacattttatttttatagattattggctaaag 252

                                                                       
Query: 488 agcaagttgactcattaggcagagcatatagagataaagcagaaagagagagggggagag 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agcaagttgactcattaggcagagcatatagagataaagcagaaagagagagggggagag 192

                               
Query: 548 ggaga-gggggagaggaaga 566
           ||||| ||||||||| ||||
Sbjct: 191 ggagaagggggagagaaaga 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)