NNAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCTAAGCTAGCCACCCACCCTAAGTAATAATTTTGTTTTA
CTGCAATGATGTATTTCCCCCATTTTTTTCTAGTCTCCAAGGCTTTTGAT
AAGCATATTCTTGAAAATAGAAGCTGGAAGAATGTTTCATTTTCTGAGTA
TAGAAAATATACTTCAAATGGTGGTTAGCGGAAGGTTGTTCATTGCTTTC
AATATCTCAAAGGTATTGAGGAGTTATAATCTCTAGGTAAAACGTTCAGG
AAATGCCAAGGAGGGTGTAGACAGGAATTCTGTCTTTAATAAACATGCTA
TGAAAATTGATACGTGTAGATATATAAACACTGATCAAATTTGGGCTGAA
TGAATAAAGTAGCTCCAGATACGATCATTAATGTAAGATGCCAATTAATG
GGGTCCAGGTTGTTCTCATATAAATAGATTTAAGATTTCACGTCTTCTTT
GAAGATATCAATACACTTTTTTTTTTTTTTCCGAGGCAAGGTTTCCCTGT
GTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTAGAA
TTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTG
CGCCACCACTGCCCAGCTAACATCGATACACTTTATGATCATGTTCACCT
TTCAAAATGAGTGCCCATCTCTAATAAAAATGGCTCTTAAAATTTAGCGT
G

GCGCCCCGCCGCGCTTGTACCGACGGAGGCCCCCCCCCCCGGGACCTTGA
AGCGCCCCCACCCCCGGTTTACGNCCCAGAATAGGGAGGAGCCACCCCCC
GATAGCTCAAGTGCCATCAAAGGGAGGCCGCGCTTGCGCCAATCCCTCGT
TATTACGCGCCCCCTTCACCCCCGTATTTGAACTCATTATTCTTTCCTTT
TTCTGCGCCGGGGGGGGCCGGGGGCCCCCACNNCCGTTCNTCNNNNNNNN
NNNNNNNNNNNNNGGGGAATAGTGGNGNGGGGGGGGGGGGAGGGGGAGGG
GGAGGGAGCGGAGGGNAGGGGGGGGGGGGGGGAGATAGGGGNGGGGAGGA
GNANNNGAGNTGGNNNNNNNNCCCCAATGGGGAAAGGGGGGAGGCCNGGG
NNNGAAGGAAAGGAGAGGTTTCCAANNAGNAGGGAAAGACAAGAGGGAGA
AGGGGGTGGGAGGCCCCCANAATCCGGGGGGGAAAAGGGATGAGAGGGGC
GGGGNNNNGGAGAGACAACGAAGAGGTGGGAAAAGGAGGGGNGGGGGGGG
CGGAGGGGG

Query= MSMg01no453_e05.b1 MSMg01no453_e05.b1 CHROMAT_FILE:
MSMg01no453_e05.b1 PHD_FILE: MSMg01no453_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:05 2005
         (544 letters)



>mm_chr2_142737505_142738453
          Length = 949

 Score =  982 bits (508), Expect = 0.0
 Identities = 533/546 (97%), Gaps = 10/546 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctaagctagccacccaccctaagtaataattttgttttactgcaatgatgtat 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gaattccctaagcaagccacccaccctaagtaataattttgttttactgcaatgatgtat 616

                                                                       
Query: 65  ttcccccatttttttctagtctccaaggcttttgataagcatattcttgaaaatagaagc 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttccccca-ttttttctagtctccaaggcttttgataagcatattcttgaaaatagaagc 557

                                                                       
Query: 125 tggaagaatgtttcattttctgagtatagaaaatatacttcaaatggtggttagcggaag 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 556 tggaagaatgtttcattttctgagtatagaaaatatacttcaaatggtggttaggggaag 497

                                                                       
Query: 185 gttgttcattgctttcaatatctcaaaggtattgaggagttataatctctaggtaaaacg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gttgttcattgctttcaatatctcaaaggtattgaggagttataatctctaggtaaaacg 437

                                                                       
Query: 245 ttcaggaaatgccaaggagggtgtagacaggaattctgtctttaataaacatgctatgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttcaggaaatgccaaggagggtgtagacaggaattctgtctttaataaacatgctatgaa 377

                                                                       
Query: 305 a------attgatacgtgtagatatataaacactgatcaaatttgggctgaatgaataaa 358
           |      |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aattggcattgatacgtgtagatatataaacactgatcaaatttgggctgaatgaataaa 317

                                                                       
Query: 359 gtagctccagatacgatcattaatgtaagatgccaattaatggggtccaggttgttctca 418
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 316 gtagctccagatacgatcattaatgtaagatgccaattaatggggtccagattgttctca 257

                                                                       
Query: 419 tataaatagatttaagatttcacgtcttctttgaagatatcaatacactttttttttttt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tataaatagatttaagatttcacgtcttctttgaagatatcaatacactttttttttttt 197

                                                                       
Query: 479 ttccgaggcaaggtttccctgtgtagccctggctgtcctggaactcactctgtagaccag 538
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ---cgaggcaaggtttccctgtgtagccctggctgtcctggaactcactctgtagaccag 140

                 
Query: 539 gctggc 544
           ||||||
Sbjct: 139 gctggc 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 949
Length adjustment: 10
Effective length of query: 534
Effective length of database: 939
Effective search space:   501426
Effective search space used:   501426
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)