Query= MSMg01no453_g04.b1 MSMg01no453_g04.b1 CHROMAT_FILE:
MSMg01no453_g04.b1 PHD_FILE: MSMg01no453_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:15 2005
(631 letters)
>mm_chr2_4847463_4848493
Length = 1031
Score = 1094 bits (566), Expect = 0.0
Identities = 623/656 (94%), Gaps = 29/656 (4%)
Strand = Plus / Plus
Query: 5 gaattctgtgttgccctgggtcccatcatgaggttatctcattatgcatatattacaagt 64
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 176 gaattctgtgttgccctgggtcccatcatgaggttatctcgttatgcatatattacaagt 235
Query: 65 atttagtttttaaaaactgaaatccaagacaggtgtggtggcacatacctttgagtccag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 atttagtttttaaaaactgaaatccaagacaggtgtggtggcacatacctttgagtccag 295
Query: 125 cactcaaggagcagaggcaagcagatctctgtgagtttgaagccaacctggtctacagag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cactcaaggagcagaggcaagcagatctctgtgagtttgaagccaacctggtctacagag 355
Query: 185 tgagttccagtatccccagggctttaaaatgagaccctgtcttaaaaaaaaaaatctgaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgagttccagtatccccagggctttaaaatgagaccctgtcttaaaaaaaaaaatctgaa 415
Query: 245 atccaaaacagttctgtccccaagcactttgggtaaaggatgctcagcctctattattac 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 416 atccaaaacagttctgtccccaagcactttggataaaggatgctcagcctctattattac 475
Query: 305 agtgtcacttctcaggccagagacgggg-ctcactgtgcaagcttaaggacctgagttcg 363
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 476 agtgtcacttctcaggccagagacgggggctcactgtgcaagcttaaggacctgagttcg 535
Query: 364 aatctctggcatccatgtaaaagccttgaatggcagtatatacctgtagcccagccctgg 423
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 536 aatctctggcatccatgtaaaagccatgaatggcagtatatacctgtagcccagccctgg 595
Query: 424 ggagaggagcactcagtggccagccagtctagactgcacacacacacacacacacacaca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ggagaggagcactcagtggccagccagtctagactgcacacacacacacacacacacaca 655
Query: 484 cacacaca--caca--cacacaca--cacacacacaca--cacacaca-g-a-------- 525
|||||||| |||| |||||||| |||||||||||| |||||||| | |
Sbjct: 656 cacacacatacacatacacacacatacacacacacacatacacacacacgcacacgcaca 715
Query: 526 ----------gtttccccactggtctgctgtggaggaggtactttgaggtaatagttcca 575
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 cacacacaccgtttccccactggtctgctgtggaggaggtactttgaggtaatagttcca 775
Query: 576 ggtagaaggcaggacttctggccacgttttcctcctccctacaagcatttactcta 631
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 776 ggtagaaggcaggacttctggccacgttttcctcctccccacaagcatttactcta 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_g04.g1 MSMg01no453_g04.g1 CHROMAT_FILE:
MSMg01no453_g04.g1 PHD_FILE: MSMg01no453_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:15 2005
(657 letters)
>mm_chr2_4883444_4884500
Length = 1057
Score = 922 bits (477), Expect = 0.0
Identities = 534/587 (90%), Gaps = 52/587 (8%)
Strand = Plus / Minus
Query: 71 tgctgtctctaaatttctacctgctgttccatcaacatctcatttctttacaaagactca 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 tgctgtctctaaatttctacctgctgttccatcaacatctcatttctttacaaagactca 998
Query: 131 catgcaagttagtcaagagcatctttatgtatgaaaatgcaaaactggagacaaccaaga 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 catgcaagttagtcaagagcatctttatgtatgaaaatgcaaaactggagacaaccaaga 938
Query: 191 tagaagaccaaggagcaccctatggcatagccacttaagaacagaacatgcatttattag 250
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 937 tagaagaccaaggagcaccctatggcatagccacttaagaacagaacatgcatttactag 878
Query: 251 aaatgttccctctctctctccctccctcttttcctgtctttcctgctccttccctccctc 310
|||||| ||
Sbjct: 877 aaatgt----------------------------------------------------tc 870
Query: 311 cctccctccctcagacacaggcctgctttctgatctcatgacagggtttatggggactag 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 cctccctccctcagacacaggcctgctttctgatctcatgacagggtttatggggactag 810
Query: 371 acatgactgttggcagagcctccagaggagcacataaataaggtctgtgggtaaaaggca 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 acatgactgttggcagagcctccagaggagcacataaataaggtctgtgggtaaaaggca 750
Query: 431 tctacccaactgactagccttggccttccaggaacccatgaatgtgtggcttatgcatgg 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tctacccaactgactagccttggccttccaggaacccatgaatgtgtggcttatgcatgg 690
Query: 491 agttctcctcagatccgggcaaccgagccagggctgtgtctacattatgctaagccaggt 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agttctcctcagatccgggcaaccgagccagggctgtgtctacattatgctaagccaggt 630
Query: 551 ccagcaagcagggaaccgaaggaagcctgggcctgactgagccatgccaaggggaagaag 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ccagcaagcagggaaccgaaggaagcctgggcctgactgagccatgccaaggggaagaag 570
Query: 611 aaacatacgatccactcttctcctcctggccatggctttgaaggcca 657
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaacatacgatccactcttctcctcctggccatggctttgaaggcca 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
