BAC Information

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BAC

Clone NameMSMg01-453G17
Chromosome2 (Build37)
Map Location 36,541,265 - 36,541,495
singlet/doubletsinglet
Overlap genenone
Upstream geneDab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345
Downstream geneOlfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453G17.T7 (MSMg01no453_g17.b1)MSMg01-453G17.TJ (MSMg01no453_g17.g1)
ACCAG540436AG540437
length791770
length of high quality
(start - end)		313 (46 - 358)240 (76 - 315)
definitionCHROMAT_FILE: MSMg01no453_g17.b1 PHD_FILE: MSMg01no453_g17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:17 2005CHROMAT_FILE: MSMg01no453_g17.g1 PHD_FILE: MSMg01no453_g17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAAGTGTATGCTCACAGTCAGCTAATGGATGGATCATAGGGCTC
CCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAAC
CCTATAGGTGGAACAACATTATGAGCTAACCAGTACCCCGGAGCTCTTGA
CTCTAGCTGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTGGAAA
GAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACA
CCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGGTGGGTGGA
TATGGNGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTTNNNTNNNNNNNNNNNNNNTTNNTTTTTTTTTTTTTNTTTTTNN
TTTTTTTTTTTTTTTTTTTTNTTTTTNTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTNTTTTTTGTTTTTTTTTTTTTTTTTTNTTTTTTTTT
NNTTNNTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTNTTTNNTTTNN
TTTTTTTNTTTNNTTTTTTTTTTTTTTTTNNNTTTTTTTNTTTTTTTTTT
TTTTTNNTTTTTNTNNNTTCCNTTTTTTTTTTTTTTTTTTTTTTTTTTNT
TTNTNTTTTTTTTTNTTTTTTTGTGGTTTTTTTTTTTGTGG

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGGAGACATGGACAAATACATGT
TCACATATGTGTGCTATCTGTCAGATCAGGGCATAGAATGTACAAAATTC
TGTATCACTGCGTATTCTTGGGTCTCTCAGTGTCTTTCTGTCTGCCTGCC
TGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCTTCTTTGTCTCCCTAT
TCCNCATGCATTTCTCACTGTCTGGATTATAATATAAAATGGTAAACAGT
TCTTTATATATCAATTTACATTGAACGAACATGACCAACCTTTGATTTAA
AATAGTACTCCCTCCCCCAAAAGTCTCTCTAAAGAATATTTTTCTTAAAC
TTTTCCATTTTTGACAAAAGCAGGATAATAATTTATTTTGCTCACATTTA
ATGTCAACACACAAATTCCTGGTGTATTGGTTATACGACTTCTTCTCTAA
TCCCTGTGACTTTATGCATAATAACCTCTGGCGCTCATTAGCAATATAGG
ATTCTTGGCTTCTCTATCTTACTTTTCACCTGGGTATTCTGTCCTTTTAT
TTGCCGATTTTATGGTACTCTAATTTTTTCTGGATGTTCATGGATCTTGG
AAGGTAGGGATACTTTCCCTTCCACTTGTTATTTATAACTTGAAATTTGC
CTTGGCTTTTTCCTAATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_g17.g1 MSMg01no453_g17.g1 CHROMAT_FILE:
MSMg01no453_g17.g1 PHD_FILE: MSMg01no453_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:17 2005
         (240 letters)



>mm_chr2_36541065_36541704
          Length = 640

 Score =  383 bits (198), Expect = e-111
 Identities = 225/239 (94%), Gaps = 8/239 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaggagacatggacaaatacatgttcacatatgtgtgctatctgtcagatcagggcata 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tcaggagacatggacaaatacatgttcacatatctgtgctatctgtcagatcagggcata 260

                                                                       
Query: 61  gaatgtacaaaattctgtatcactgcgtattcttgggtctctcagtgtctttctgtctgc 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 gaatgtacaaaattctgtatcactgcgtatgcttgggtctctcagtgtctttctgtctgc 320

                                                                       
Query: 121 ctgcctgttctctctctctctctctctctctctctctctctctctctctctctctctctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcctgttctctctctctctctctctctctctctctctctctctctctctctctctctc 380

                                                                      
Query: 181 tctctctctctctctctctctctctcatcttctttgtctccctattccncatgcatttc 239
           ||||||||||||||||||        |||||| ||||||||||| ||  ||||||||||
Sbjct: 381 tctctctctctctctctc--------atcttcattgtctccctagtcagcatgcatttc 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 112
Number of extensions: 47
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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