BAC Information

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BAC

Clone NameMSMg01-454B05
Chromosome2 (Build37)
Map Location 156,245,864 - 156,419,460
singlet/doubletdoublet
Overlap geneEpb4.1l1, 0610011L14Rik
Upstream geneNcoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941
Downstream geneDlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454B05.T7 (MSMg01no454_b05.b1)MSMg01-454B05.TJ (MSMg01no454_b05.g1)
ACCAG540938AG540939
length717719
length of high quality
(start - end)		490 (53 - 542)476 (84 - 559)
definitionCHROMAT_FILE: MSMg01no454_b05.b1 PHD_FILE: MSMg01no454_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:09 2005CHROMAT_FILE: MSMg01no454_b05.g1 PHD_FILE: MSMg01no454_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,418,975 - 156,419,460)(156,245,864 - 156,246,339)
sequence
NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTCTATTGCCGGGCCATGGTGGCGCACACCTTTAATC
CCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCC
TGATCTACAGAGTGAGTTCCAAGACAGCTGGGGCTACACAGAGAAACCCT
GTCTGGAAAAACCAAAAAAAAAAAAAAAAAAAAGAATTCTCTCTAGCTTA
ACTTAGGTGAATTACTACACAGGTGTACACCTAATACAATGTACATTCAG
AATTATTGCCCTTTCCCTGTTTGGTCGTGCACACCTGTAACTCACAAGTA
AGACAGGGGAATCATGAGTTCAGGGTTAGCCTGGGCTACACAGTGAGATC
CTTTTGGGGAAAGATATTAATTCACATTAATATATGTGTGCTTCCCACAA
TATCAAGTTTAAATATTTTATCAAATATTCATCAAACTGACTAAGTCTTG
TATATTTTGTATGTGTTTATATGTTCATGTATATGGATGAGAGTGTGTGT
GTGTNTNTNTTTTTTNNTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTT
TTTTTNTNTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTCCCCTTTTTTT
TTTCTTCCCCTTTTCCC

NNNNTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGCCTTCTGAGGTCT
AGCCCTTGCTCTGGGAACCTAAGCTCAGTTTCTTCAGCTAACCCCATAGA
CGCCCTACCTTCTATGGATACTATTCTAGGTTCACTGTTTTCGTTACTTT
GTCCTTTTGCTATGCTTAGCTTTACGTGTGTGTTCAAAGCAGTACCTTCC
GGCAGGAGCCTGTAAGGTCCAGGGCGGATATAATCATAATTCAGAGAAAC
GCTTGACTTTGGGCATGCTTGGGCCTGTGGGTCCCCAGGGTCTTGGGACC
AGGGGCTCGGCCCTTGATTCCAAAGAGTGCCAAAGGACTGCCACCTGAGA
CTGGTTGGAAAGAGCTGCGAAGCCCTCCACAGCTCCGCAGCTTAGGCCGC
CCGAACAATAGGAGGGAGGCTCAAGGGTAGTGGGCGTCGGCCAGGTCCCT
GCTGGAGGGAGAGGAGGNCAGTGGTGCTGCTGGTCCCCCAGGTTAGCCCA
GGCTACCGGCCTGAACNGCCAGCTCTCGGTCAAAGGCGAGGTGAAGCACA
CTTGGTGCCGGCGGTGACTCTCTAGGAGGTGGAGATAGGCCGAGCCCCCA
GGTTTTGGAACTGGAGGGAGAGGATGTCCCCCGGAAAAGTTCGTTTTCGG
GGCCCCTTGTCTTTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_b05.b1 MSMg01no454_b05.b1 CHROMAT_FILE:
MSMg01no454_b05.b1 PHD_FILE: MSMg01no454_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:09 2005
         (490 letters)



>mm_chr2_156418831_156419720
          Length = 890

 Score =  940 bits (486), Expect = 0.0
 Identities = 486/486 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctctattgccgggccatggtggcgcacacctttaatcccagcacttgggaggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaattctctctattgccgggccatggtggcgcacacctttaatcccagcacttgggaggc 571

                                                                       
Query: 65  agaggcaggcagatttctgagttcgaggccagcctgatctacagagtgagttccaagaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agaggcaggcagatttctgagttcgaggccagcctgatctacagagtgagttccaagaca 511

                                                                       
Query: 125 gctggggctacacagagaaaccctgtctggaaaaaccaaaaaaaaaaaaaaaaaaaagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gctggggctacacagagaaaccctgtctggaaaaaccaaaaaaaaaaaaaaaaaaaagaa 451

                                                                       
Query: 185 ttctctctagcttaacttaggtgaattactacacaggtgtacacctaatacaatgtacat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttctctctagcttaacttaggtgaattactacacaggtgtacacctaatacaatgtacat 391

                                                                       
Query: 245 tcagaattattgccctttccctgtttggtcgtgcacacctgtaactcacaagtaagacag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcagaattattgccctttccctgtttggtcgtgcacacctgtaactcacaagtaagacag 331

                                                                       
Query: 305 gggaatcatgagttcagggttagcctgggctacacagtgagatccttttggggaaagata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gggaatcatgagttcagggttagcctgggctacacagtgagatccttttggggaaagata 271

                                                                       
Query: 365 ttaattcacattaatatatgtgtgcttcccacaatatcaagtttaaatattttatcaaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttaattcacattaatatatgtgtgcttcccacaatatcaagtttaaatattttatcaaat 211

                                                                       
Query: 425 attcatcaaactgactaagtcttgtatattttgtatgtgtttatatgttcatgtatatgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 attcatcaaactgactaagtcttgtatattttgtatgtgtttatatgttcatgtatatgg 151

                 
Query: 485 atgaga 490
           ||||||
Sbjct: 150 atgaga 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no454_b05.g1 MSMg01no454_b05.g1 CHROMAT_FILE:
MSMg01no454_b05.g1 PHD_FILE: MSMg01no454_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:09 2005
         (476 letters)



>mm_chr2_156245664_156246539
          Length = 876

 Score =  837 bits (433), Expect = 0.0
 Identities = 465/476 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggccttctgaggtctagcccttgctctgggaacctaagctcagtttcttcagctaacc 60
           ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 ctggccttctgaggtctggcccttgctctgggaacccaagctcagtttcttcagctaacc 260

                                                                       
Query: 61  ccatagacgccctaccttctatggatactattctaggttcactgttttcgttactttgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatagacgccctaccttctatggatactattctaggttcactgttttcgttactttgtc 320

                                                                       
Query: 121 cttttgctatgcttagctttacgtgtgtgttcaaagcagtaccttccggcaggagcctgt 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttcctatgcttagctttacgtgtgtgttcaaagcagtaccttccggcaggagcctgt 380

                                                                       
Query: 181 aaggtccagggcggatataatcataattcagagaaacgcttgactttgggcatgcttggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggtccagggcggatataatcataattcagagaaacgcttgactttgggcatgcttggg 440

                                                                       
Query: 241 cctgtgggtccccagggtcttgggaccaggggctcggcccttgattccaaagagtgccaa 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 cctgtgggtccccagggtcttgggaccaggggctcggcccttgcttccaaagagtgccaa 500

                                                                       
Query: 301 aggactgccacctgagactggttggaaagagctgcgaagccctccacagctccgcagctt 360
           ||||||||||||| ||||||||||||||||||||||  | ||||||||||||||||||||
Sbjct: 501 aggactgccacctcagactggttggaaagagctgcgtggtcctccacagctccgcagctt 560

                                                                       
Query: 361 aggccgcccgaacaataggagggaggctcaagggtagtgggcgtcggccaggtccctgct 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 aggccgcccgaacaataggagggaggctgaagggtagtgggcgtcggccaggtccctgct 620

                                                                   
Query: 421 ggagggagaggaggncagtggtgctgctggtcccccaggttagcccaggctaccgg 476
           |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggagggagtggaggccagtggtgctgctggtcccccaggttagcccaggctaccgg 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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