BAC Information

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BAC

Clone NameMSMg01-455D03
Chromosome2 (Build37)
Map Location 87,192,721 - 87,193,392
singlet/doubletsinglet
Overlap geneOlfr1119-ps1
Upstream geneOlfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118
Downstream geneOlfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455D03.T7 (MSMg01no455_d03.b1)MSMg01-455D03.TJ (MSMg01no455_d03.g1)
ACCAG541792AG541793
length743741
length of high quality
(start - end)		680 (44 - 723)639 (73 - 711)
definitionCHROMAT_FILE: MSMg01no455_d03.b1 PHD_FILE: MSMg01no455_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:38 2005CHROMAT_FILE: MSMg01no455_d03.g1 PHD_FILE: MSMg01no455_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCCCTCTCAACCAAGATCCAGCTGAGAGCTTGATCCACAGGTGAGT
CTTAGGAGTAGAGAATAGAGTGGAGGGTTACCGACAGCCACATAAATGTC
ATTGTACATCACAGCCAGGAGGAATCCCTTTGTGGCTCCCAGGGTAGGAG
TCAAGCACAGTTTTGTAGCACAGGCAATGAAAGAGATAGCTCTTTTTTGA
GTCCCAAGACCATTCTAGGAAGAGTAATATATATATATATATACCATATC
TCTAAAAAAGAAAATTTGCCAAAGGAAAAAACTACCCTTGTGATTAGTAC
AATGGTTTCATTGCCCAGTAGAATAAAGGAGTATGCAATAAATAAGAGTC
CAATGGAAACCACTGGAAGTGGGAAATTCAGAAAATTACAGAACACATCT
CTTAGCTTGATTTGATTTCTTTCTGAAGGTTTTGATTGGTGGTTTTTTGT
GAAGCAGATTCAATTGACCAAGATTATTTATTTTCTCTTTAGGGTAAGAA
GCACTTAATTAAATATTATAAACATTAATGATAAATCATGGTAATTATTT
TCAACTGTAAAATGTAAATTTCACTTTAAGAGTTTTAGAACTTTTCATGA
TTTATAAATACAGTGTTTGAAATTTCTTTAATTTTTATTGATATCACATT
TTTCACCCCTTTAAACTCTAGCATGTGTGTGTGTGTTTGTGTG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCTTCACCATGTCCACAAACTGGACTA
TGATTTCTCTGCACAGTGGCTCTGGGCTTCCTTGGTGCTGGCACCCAGGA
GGGGACAGTTGATGACGTTCTCATGGTCCACTAAATCCAGGTCCCGTGGT
GGCTCTTCTGTAAACACATCCAGTGAAGCCCCAGCATACTGACCAGACTG
CAGGGCACGCAACAGGAACAGGGCACCTTCATCCACAATGCCTCCTTGAG
CACAGTTCACCACTCACACACCTTTCTTGCACTGAGCAAAGTGCTGTTAT
TCAGCAAGCCTGTGGTGGAGGGCAAGAGTGGGGTATGGACAGTAATGAAG
TCACAGAGATGCCAGATCTCCTCCTGCGGCAACTGCTGAACACAAAAGGA
GGCTGTGACTTCAGGATAAATGATGGGGTCATAGCCTACAGTTTTCATTC
CAAAGGACTGTATTCCCATGGCCACCTGTCTTCTGATTCTGCCTAGGCCA
AGAATTCCCAGTGTCTTCCCGTTCAGTTCTGTCCCCATGAACTTCTGGTC
CCATTTGCCATCTTTCATCGAAGCAGTCACCTGGGGAATCTGCCTGGCCA
GGCACATGATCATTCCACAGATGAGCTCCACAGCATTGATGCTGTTTCCG
TGGGGGTGTTCATGACTAAGATACTCTTCCTTGTGGCAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_d03.b1 MSMg01no455_d03.b1 CHROMAT_FILE:
MSMg01no455_d03.b1 PHD_FILE: MSMg01no455_d03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:38 2005
         (680 letters)



>mm_chr2_87192517_87193592
          Length = 1076

 Score = 1172 bits (606), Expect = 0.0
 Identities = 657/676 (97%), Gaps = 4/676 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatccctctcaaccaagatccagctgagagcttgatccacaggtgagtcttagga 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gaattcatcccactgaaccaagatccagctgagagcttgatccacaggtgagtcttagga 817

                                                                       
Query: 65  gtagagaatagagtggagggttaccgacagccacataaatgtcattgtacatcacagcca 124
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gtagagaatagagcagagggttaccgacagccacataaatgtcattgtacatcacagcca 757

                                                                       
Query: 125 ggaggaatccctttgtggctcccagggtaggagtcaagcacagttttgtagcacaggcaa 184
           |||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 756 ggagaaatccctttgtggctcccagagtaggagtgaagcacagttttgtagcacaggcaa 697

                                                                       
Query: 185 tgaaagagatagctcttttttgagtcccaagaccattctaggaagagtaatatatatata 244
           ||||||| |||||||||||||||||||||||||||| ||||||||||||    |||||||
Sbjct: 696 tgaaagacatagctcttttttgagtcccaagaccatcctaggaagagta----atatata 641

                                                                       
Query: 245 tatataccatatctctaaaaaagaaaatttgccaaaggaaaaaactacccttgtgattag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tatataccatatctctaaaaaagaaaatttgccaaaggaaaaaactacccttgtgattag 581

                                                                       
Query: 305 tacaatggtttcattgcccagtagaataaaggagtatgcaataaataagagtccaatgga 364
           ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 580 tacaatggtgtcattgcccagtagaataaaggagtatgtaataaataagagtccaatgga 521

                                                                       
Query: 365 aaccactggaagtgggaaattcagaaaattacagaacacatctcttagcttgatttgatt 424
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 520 aaccactggaagtgggaaattcagaaaattatagaacacatctcttagcttgatttgatt 461

                                                                       
Query: 425 tctttctgaaggttttgattggtggttttttgtgaagcagattcaattgaccaagattat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tctttctgaaggttttgattggtggttttttgtgaagcagattcaattgaccaagattat 401

                                                                       
Query: 485 ttattttctctttagggtaagaagcacttaattaaatattataaacattaatgataaatc 544
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 400 ttattttctctttagggtaagaagcacttaattaaatattataaatattaatgataaatc 341

                                                                       
Query: 545 atggtaattattttcaactgtaaaatgtaaatttcactttaagagttttagaacttttca 604
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 340 atggtaattattttcaactgtaaaatgtaaatttcactttaatagttttagaacttttca 281

                                                                       
Query: 605 tgatttataaatacagtgtttgaaatttctttaatttttattgatatcacatttttcacc 664
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgatttataaatacagtgtttgagatttctttaatttttattgatatcacatttttcacc 221

                           
Query: 665 cctttaaactctagca 680
           ||||||||||||||||
Sbjct: 220 cctttaaactctagca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1076
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1066
Effective search space:   714220
Effective search space used:   714220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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