BAC Information

Click to search

BAC

Clone NameMSMg01-455F16
Chromosome2 (Build37)
Map Location 106,498,370 - 106,667,004
singlet/doubletdoublet
Overlap geneC130023O10Rik
Upstream genePax6os1, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15
Downstream geneLOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455F16.T7 (MSMg01no455_f16.b1)MSMg01-455F16.TJ (MSMg01no455_f16.g1)
ACCAG541913AG541914
length733719
length of high quality
(start - end)		609 (63 - 671)548 (56 - 603)
definitionCHROMAT_FILE: MSMg01no455_f16.b1 PHD_FILE: MSMg01no455_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:50 2005CHROMAT_FILE: MSMg01no455_f16.g1 PHD_FILE: MSMg01no455_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,498,370 - 106,498,977)(106,666,456 - 106,667,004)
sequence
CATATATTTGCGGCGCTAAACGACTCACTTTTCCCAGAGGATCCGCGGAA
TTCAGAGTTTCCCCTCCCTCTGTTCCCCAAGTGCTGAGACTAAAGATGTG
TCCCACCATGCCTGTCTTAATGATATTCTCCAGTCCAACCTTTAACCTAC
TGTTGGGATTTTCTTGAGGTAAAACACTCCAGTGATTTTAGGCAACAAAA
GTTCAGCAATTGTTATCATTGAAATAAAAAATAAATTGTTCTGTTAATTT
TTTTTAACGCCTAAGAATCCTTTTGTTTTTATTTTCTTGAGTCTAGTATC
TTCATGTCATTTACACACAGACACCTAGTCTTTCTTCTGTGTGCATTTAG
TCAGAGTATTCCACACATGCATCAGTGAGGTATCACATCAGCCCAGGAAT
TCTGCATGTATTCTTCTACAAAACTGTGGAACTAACACACTGTTCACCGC
ACAGGACAGTGGCCATTGGGGGATGTGTTTCATCTAATTTCTTACAAATA
ATGAACAAATCCTATTGGTTTTAATGGTATTCTCAAGTCCACATTTTGAC
ATAAATTATTTATTCTACTAATTTAATGGCAAACAGTCACCAAGGTGAAC
TTAAGGCAATAATTTCACAAGTATATTGGGTACAGGTTAATTATTTAGGT
GCCTTGAACAGCCTTGCAATAATGAACTCTCCTGGGTAGAGCCATAAAAT
ACATTCCTCAGCTTAAAATAGTGGAGCGGGGTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTATAAACAGAGGAGCTGGGATTTGGCAATGGACAACTCTGGGC
CCCAATCCTACATCCACAGGATGATTGATAAGGTATTTCTAAGACACCCA
ATAAACAGATTCACAGAAAACAACATCTACAGATATGAACTACTTTGGAA
TCTGTTCTTTACCCAGCTTTTATACCCAACTCCAGTGGCAAAAGTTTTAA
TCAGCTTTGTGACTTGCCCAACTTTCACATGAAATGCTGTACTTCATCCT
CAGAGAAACTGCAGAAAGGAAGACTTGAACACTTGCCATGCTTTTTTTTT
CCCCTGAAGATACAACAGGCAAAAAATGGCTGAGCTCAGGACCACGCAGC
TGGTAAATATAACAGGCAAGAATTGAACCTGGTACGTTAGACTGTTTGGC
TTCCCAGAGTAATTTTGAGTTTTGCATGTAGAATTTCCATAAACGTATCC
TAGTGAATGGGCAGCACAGGAGAGCAGCAGTCATTTGGTGTGGTGAGAAG
AGCCACCCAGGTAGGTTTTTTATTCCAGTACCACTGTTAAACAGATTGAG
ATGGGACCTGGTCAAAAAGCATCCCTTCTCTGGGCCTCCTACTCTTCCTC
TGTTAAGAAGATGCTGGGAAGATGAGTCCGCCAGTACCTTGCCTGCTGGG
CATGGACCTAGAATTGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_f16.b1 MSMg01no455_f16.b1 CHROMAT_FILE:
MSMg01no455_f16.b1 PHD_FILE: MSMg01no455_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:50 2005
         (609 letters)



>mm_chr2_106498170_106499177
          Length = 1008

 Score = 1154 bits (597), Expect = 0.0
 Identities = 606/609 (99%), Gaps = 1/609 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctccctctgttccccaagtgctgagactaaagatgtgtcccaccatgcctgtcttaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctccctctgttccccaagtgctgagactaaagatgtgtcccaccatgcctgtcttaatg 260

                                                                       
Query: 61  atattctccagtccaacctttaacctactgttgggattttcttgaggtaaaacactccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atattctccagtccaacctttaacctactgttgggattttcttgaggtaaaacactccag 320

                                                                       
Query: 121 tgattttaggcaacaaaagttcagcaattgttatcattgaaataaaaaataaattgttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattttaggcaacaaaagttcagcaattgttatcattgaaataaaaaataaattgttct 380

                                                                       
Query: 181 gttaattttttttaacgcctaagaatccttttgtttttattttcttgagtctagtatctt 240
           ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 gttaa-tttttttaacgcctaagaatccgtttgtttttattttcttgagtctagtatctt 439

                                                                       
Query: 241 catgtcatttacacacagacacctagtctttcttctgtgtgcatttagtcagagtattcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catgtcatttacacacagacacctagtctttcttctgtgtgcatttagtcagagtattcc 499

                                                                       
Query: 301 acacatgcatcagtgaggtatcacatcagcccaggaattctgcatgtattcttctacaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acacatgcatcagtgaggtatcacatcagcccaggaattctgcatgtattcttctacaaa 559

                                                                       
Query: 361 actgtggaactaacacactgttcaccgcacaggacagtggccattgggggatgtgtttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 actgtggaactaacacactgttcaccgcacaggacagtggccattgggggatgtgtttca 619

                                                                       
Query: 421 tctaatttcttacaaataatgaacaaatcctattggttttaatggtattctcaagtccac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctaatttcttacaaataatgaacaaatcctattggttttaatggtattctcaagtccac 679

                                                                       
Query: 481 attttgacataaattatttattctactaatttaatggcaaacagtcaccaaggtgaactt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 attttgacataaattatttattctactaatttaatggcaaacagtcaccaaggtgaactt 739

                                                                       
Query: 541 aaggcaataatttcacaagtatattgggtacaggttaattatttaggtgccttgaacagc 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 740 aaggcaataatttcacaagtatattgggtacaggttaattatttaggtgcctcgaacagc 799

                    
Query: 601 cttgcaata 609
           |||||||||
Sbjct: 800 cttgcaata 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1008
Length adjustment: 10
Effective length of query: 599
Effective length of database: 998
Effective search space:   597802
Effective search space used:   597802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no455_f16.g1 MSMg01no455_f16.g1 CHROMAT_FILE:
MSMg01no455_f16.g1 PHD_FILE: MSMg01no455_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:50 2005
         (548 letters)



>mm_chr2_106666256_106667204
          Length = 949

 Score =  982 bits (508), Expect = 0.0
 Identities = 539/550 (98%), Gaps = 3/550 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctataaacagaggagctgggatttggcaatggacaactctgggccccaatcctacatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 749 tctataaacagaggagctgggatttggcaatggacaactctgggccccaatcctatatcc 690

                                                                       
Query: 61  acaggatgattgataaggtatttctaagacacccaataaacagattcacagaaaacaaca 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 acaggatgcttgataaggtatttctaagacacccaataaacagattcacagaaaacaaca 630

                                                                       
Query: 121 tctacagatatgaactactttggaatctgttctttacccagcttttatacccaactccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tctacagatatgaactactttggaatctgttctttacccagcttttatacccaactccag 570

                                                                       
Query: 181 tggcaaaagttttaatcagctttgtgacttgcccaactttcacatgaaatgctgtacttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tggcaaaagttttaatcagctttgtgacttgcccaactttcacatgaaatgctgtacttc 510

                                                                       
Query: 241 atcctcagagaaactgcagaaaggaagacttgaacacttgccatgcttttttttt--ccc 298
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 509 accctcagagaaactgcagaaaggaagacttgaacacttgccatgcttttttttttcccc 450

                                                                       
Query: 299 ctgaagatacaacaggcaaaaaatggctgagctcaggaccacgcagctggtaaatataac 358
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 449 ctgaagatacaacaggcaaaagatggctgagctcaggaccacacagctggtaaatataac 390

                                                                       
Query: 359 aggcaagaattgaacctggtacgttagactgtttggcttcccagagtaattttgagtttt 418
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 389 aggcaagaattgaacctggtacgttagactgtttggcttcccagagtcattttgagtttt 330

                                                                       
Query: 419 gcatgtagaatttccataaacgtatcctagtgaatgggcagcacaggagagcagcagtca 478
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gcatgtagaatttccataaatgtatcctagtgaatgggcagcacaggagagcagcagtca 270

                                                                       
Query: 479 tttggtgtggtgagaagagccacccaggtaggttttttattccagtaccactgttaaaca 538
           ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 269 tttggtgtggtgagaagagtcacc-aggtaggttttttattccagtaccactgttaaaca 211

                     
Query: 539 gattgagatg 548
           ||||||||||
Sbjct: 210 gattgagatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 949
Length adjustment: 10
Effective length of query: 538
Effective length of database: 939
Effective search space:   505182
Effective search space used:   505182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |