Query= MSMg01no455_j16.b1 MSMg01no455_j16.b1 CHROMAT_FILE:
MSMg01no455_j16.b1 PHD_FILE: MSMg01no455_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:10 2005
(430 letters)
>mm_chr2_4317242_4318071
Length = 830
Score = 540 bits (279), Expect = e-158
Identities = 315/331 (95%), Gaps = 9/331 (2%)
Strand = Plus / Minus
Query: 1 ttatagcctgggataaagtacttagaattctggtccctggtgtacataggacataatcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttatagcctgggataaagtacttagaattctggtccctggtgtacataggacataatcat 271
Query: 61 ccaacagctgtgttttatttcactagtttataaaatgatgatgtaattttataatagtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ccaacagctgtgttttatttcactagtttataaaatgatgatgtaattttataatagtga 211
Query: 121 agtttttatatgtgtgtgtatggtgcatgtgtatatatctgtgtgtgtgtgtgaaagaga 180
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 210 agtttttatatgtgtgtgtatggtgcatgtgtacatatctgtgtgtgtgtg--aaagaga 153
Query: 181 gagagacaaagagagacagacagacaggcagatagacagacagagagcgagagagactag 240
|||||||||||||||| |||||||||| |||| ||||||||||| |||||||||||||||
Sbjct: 152 gagagacaaagagagagagacagacagacagagagacagacagaaagcgagagagactag 93
Query: 241 tacaagcaatatttt---catatgtctgtgtagagtgtagagtttgactatgttgggtgt 297
||||||||| | |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 92 tacaagcaaga----gagcataggtctgtgtagagtgtagagtttgactatgttgggtgt 37
Query: 298 cttcctctatcacacacacacacacacacac 328
|||||||||||||||||||||||||||||||
Sbjct: 36 cttcctctatcacacacacacacacacacac 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_j16.g1 MSMg01no455_j16.g1 CHROMAT_FILE:
MSMg01no455_j16.g1 PHD_FILE: MSMg01no455_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:10 2005
(560 letters)
>mm_chr2_4183317_4184276
Length = 960
Score = 1060 bits (548), Expect = 0.0
Identities = 557/560 (99%)
Strand = Plus / Plus
Query: 1 ctccaaaattccctatattgtgaggtgttgaaggacagtttggatcatccctcccacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccaaaattccctatattgtgaggtgttgaaggacagtttggatcatccctcccacagt 260
Query: 61 cacatccctgactgtgaaaaacactaataacccttctgggggacttccagttttaggggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatccctgactgtgaaaaacactaataacccttctgggggacttccagttttaggggg 320
Query: 121 gcgcccacctttggtccctaagtttcttgaacaccagccagctcattgcttcagcttcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcgcccacctttggtccctaagtttcttgaacaccagccagctcattgcttcagcttcct 380
Query: 181 gcttgcttcctgttgggaagacactgtgtgagacactacacctcatggcccctcagttat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttgcttcctgttgggaagacactgtgtgagacactacacctcatggcccctcagttac 440
Query: 241 ttctgctggctcctcacccccaaatcttcatggcccatgtttcatgtcagccattctgtt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctgctggctcctcacccccaaatcttcatggcccatgtttcatgtcagccattctgtt 500
Query: 301 taccacctctcaaggtttttaatttgaataaggagctccagagagactgacacctcctct 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 taccacctctcaaggtttttaatttgaataaggagctccagagagactgccacctcctct 560
Query: 361 gttatcttacagacaacaaaacgaagctcacagctcttaaatgctgagtcactagaggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttatcttacagacaacaaaacgaagctcacagctcttaaatgctgagtcactagaggct 620
Query: 421 cagctaggtaacaaatgccttaaacactgtacatcaaataatccaatgagactggtttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagctaggtaacaaatgccttaaacactgtacatcaaataatccaatgagactggtttca 680
Query: 481 tcgtccacattgagtagggaaggaagctgaggcctcactcatctgccccaggggtagcgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcgtccacattgagtagggaaggaagctgaggcctcactcatctgccccaggggtagcgt 740
Query: 541 agctggctgggctcagttgg 560
||||||||||||||||||||
Sbjct: 741 agctggctgggctcagttgg 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
