BAC Information

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BAC

Clone NameMSMg01-455M01
Chromosome2 (Build37)
Map Location 86,976,084 - 86,976,424
singlet/doubletsinglet
Overlap geneOlfr1110
Upstream geneOlfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402
Downstream geneOlfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455M01.T7 (MSMg01no455_m01.b1)MSMg01-455M01.TJ (MSMg01no455_m01.g1)
ACCAG542218AG542219
length737738
length of high quality
(start - end)		341 (73 - 413)651 (73 - 723)
definitionCHROMAT_FILE: MSMg01no455_m01.b1 PHD_FILE: MSMg01no455_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:21 2005CHROMAT_FILE: MSMg01no455_m01.g1 PHD_FILE: MSMg01no455_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:21 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXATACAAAAGAGGATCCGCGG
AATTCATTCATATCAAAAAAGACTGAAAATCCTAATTGGCAGGTTCCTCT
CTTCTTGCTTTTCAGTGTACTGTATTTCATCATTCTTGTAGGTAACTGGG
GAATGATTATCTTGATCTGGTTGAATGCCCAACTTCATACACCAATGTAC
TTTTTCCTTAGTAACCTTTCTTTCTGTGATATCTGCTACTCTACTATCAT
TGCTCCAAAGATGCTGCTCAATTTCTTGTCAGAACACAAGTCTAGTACAT
TCTTTGCCTGTATTTTTTTTAGTTTCTTTTTTGCAGCTTATGTAACTACA
GAAGTAATACTCCTGTCTATGATGGCCTATGATCGCTATGTGGCAATTGC
AAATCCCTTAATGTATACGGTTATCATGACACACAACATCTGCACTCAAA
TGGTTCTTGCAAGTTACTTGGGTGGCCTCATAAATTCCATGATTCATACA
ATAGGTTTACTCTAACTACACTTCTGTGGTCCAAATATTGAGAATCACTT
CTTCTGTGATGCTCCCCCTCTTTTGAAGCTTGCATGCTCTGATGCATACC
CCATTGATATGCCGCCTTTGCCCTTTCTCTGTAATGCATGCTATTTTCTC
TTTCCCCATCATTCTGGCGTCTCATATCCACATTATCATTGCCATCCTGA
ATAACCCTCTCACCTGAACTAGATGTGCTTAACCTCC

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTAAAAGCCCTCCCAAAAAGCCCAAGA
TCAGTTGGTTTTAGTGCAGAACTTCAAAGAAGACCTAATACCAATAGTTG
TCAAACTATTTCACAAAATAGAAACAGAAGGAATACTACCTAATTCACTC
TATAAAACCACAGTCATTCTGATACCTAAGACATACAACAACCCAACAAA
GAAAGAGAACTTCAGACAAATTTCACTTAGGAATATCGTTGCAAAAATAC
TCAATAAAATTCTTGCAAACAGAATGCAATTACACATCAAATGAGTACTC
ACTACCATCAAATATCTTCAACCCAGGAATGCAGTAATGGTTCAACATAC
AAAAATCTTTCAGCATAATCCACTATATAAACAAACTCAGAAAACAAGTC
ACATGGTAATCTCATTAGATGCTGAAAAAGCCTTCAAGAAAATACAACAC
ACTTTCATGTTAAAAATCTTGGAAAGATCAGAAAGTCAAAGCACATAACT
AAACATATTAAGAACAATATACAGCAAACCAACACCTAACATCAAATTAA
ATGGAGAGAAATGTGATACAATCCCACTAAAATCAAACAAGACAAGGTTG
CCCACTCTATTCCTATTAATTCAATATAGTAGCCGAAGTTCTAACTAGAG
CAATTAGACAACAAAAGTAGGTCTAAGGGATATAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_m01.b1 MSMg01no455_m01.b1 CHROMAT_FILE:
MSMg01no455_m01.b1 PHD_FILE: MSMg01no455_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:21 2005
         (341 letters)



>mm_chr2_86975884_86976624
          Length = 741

 Score =  590 bits (305), Expect = e-173
 Identities = 332/345 (96%), Gaps = 8/345 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaaaatcctaattggcaggttcctctcttcttgcttttcagtgtactgtatttcatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 541 ctgaaaatcctaattggcaggttcctctcttcttgcttttcagtgtagtgtatttcatca 482

                                                                       
Query: 61  ttcttgtaggtaactggggaatgattatcttgatctggttgaatgcccaacttcatacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttcttgtaggtaactggggaatgattatcttgatctggttgaatgcccaacttcatacac 422

                                                                       
Query: 121 caatgtactttttccttagtaacctttctttctgtgatatctgctactctactatcattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caatgtactttttccttagtaacctttctttctgtgatatctgctactctactatcattg 362

                                                                       
Query: 181 ctccaaagatgctgctcaatttcttgtcagaacacaagtctagtacattctttgcctgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctccaaagatgctgctcaatttcttgtcagaacacaagtctagtacattctttgcctgta 302

                                                                       
Query: 241 tttttttt----agtttcttttttgcagcttatgtaactacagaagtaatactcctgtct 296
               || |    |||||||||||||||| ||||||||| ||||||||||| |||||||||
Sbjct: 301 ----ttctgcagagtttcttttttgcagtttatgtaacgacagaagtaatcctcctgtct 246

                                                        
Query: 297 atgatggcctatgatcgctatgtggcaattgcaaatcccttaatg 341
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atgatggcctatgatcgctatgtggcaattgcaaatcccttaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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