BAC Information

Click to search

BAC

Clone NameMSMg01-456B06
Chromosome2 (Build37)
Map Location 123,414,069 - 123,414,602
singlet/doubletsinglet
Overlap genenone
Upstream geneGatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik, LOC100043360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456B06.T7 (MSMg01no456_b06.b1)MSMg01-456B06.TJ (MSMg01no456_b06.g1)
ACCAG542465AG542466
length740782
length of high quality
(start - end)
537 (47 - 583)240 (80 - 319)
definitionCHROMAT_FILE: MSMg01no456_b06.b1 PHD_FILE: MSMg01no456_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:46 2005CHROMAT_FILE: MSMg01no456_b06.g1 PHD_FILE: MSMg01no456_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACATTTCTATAATTCAAAATCAGAAAAGCTTACATAGGATACC
ATCATTGTGATTGGCATATTTAAAACTCAAAATACAGAAGTAGAGACAGG
TATAAGTGATGCACGAGTATAGCTTCTCTTATGGAAGTGCTCAGAGAGGG
TATGTGAGCATGGAGCCACATGGGAACTAAGACAAATACCCAGGTGTCAC
TTCACTCTCATTCCATGACAAAGTGTAGTCAACACCTCAAAATCCTGTGG
GTCACTATCTGCAGCCTATCCGAGGAATGAACCCTTTTTTTCAATGCATA
TTTTAAATAGACTTCAAATGAGTAATACTAAAAGCTTCCCCCGTTCTGCC
CCTCCCATGGTATTGGTTTGTTTCTCAACTACATTTCATGAGAGTTGAGA
GATTTGTGATAGGAAGGTAGGTGGAAAATAAACCTCCAAATTCTCAGATT
CTGACAGTTGAAGATTAAACTGTGAGCACAGATTGTCAGGCTAGAAGCAA
AGTACTTTCCTGCATATAAAGGAAGGAAAGGTGTTGATTTGCGCCCGATT
CATGGGATGTGCAGTTGCATTATGAATGATCAATGAACACCGTCTTCATC
AGAACAATGGCAACTGTGACAATTGACGCACATCCAAAATGCCGAATTAA
TTTGCCTAACTCTTATAGGAAAACCAAAGGGATCCTTTTT
ACCTGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTCTGTTTTCTATTCTATT
CCACTGGCCTTTGTGTTTACTTTTGTAGTGGGAACCTGCTGCTTCTATCT
CTATTGTTTAGTCAGGTATGATGACTTAGCATGTGTTTTTCTGCTTAGGT
TTGCTTTGGTATACAGGGTCTTTTGTGTTTGCATATGAGTTTTAGGACTT
GTTTTCTCGCTCTGTAATGTCACTATTGCATTGACTGTATGTCTATTTTG
GTGTTAGAGACAATTTCACAGGAACATATTAGGTCTTTCTACCTTCCTGC
ATTTTTGATGTCTTAAAGTTTTCCTTGTAGATGTCTCTTCCCTCTGTGAA
TAGCTTTATTAGTTATTTGATTCTATCTTCTGACCGAGTTATCACAGGTT
ACTTTCCATAATTATTTTTGGGAGAGTTCAGATTGTATATCTCCTTGTTC
CTCTCTTTCCTCCTTTTTTCCTTCTCCTTTTCTTTCATTTTCCTTTTTTT
TTCTTCCTCTTTTCTTTCCTCTCGTCTTTTCCCCCTTTTTTCTTCCCTAC
CTTTTCTTCCTTTTTTTTTTTCCTTCTATTTTGCCTCCCCATTACTTCTT
TGTTTTCTTCTTCCCTTCGTTTTTTTTCTCTTTCTTTTATCCTCTCGCTC
TCCCTCTTTCTTTTTTTGCTTTCCCGCGCCCTTTTTTTCTTCCTTCTTTT
TTTTCACTTCTTCTTCTTCTTCCCTTTTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_b06.b1 MSMg01no456_b06.b1 CHROMAT_FILE:
MSMg01no456_b06.b1 PHD_FILE: MSMg01no456_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:46 2005
         (537 letters)



>mm_chr2_123413866_123414802
          Length = 937

 Score = 1002 bits (518), Expect = 0.0
 Identities = 530/534 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccacatttctataattcaaaatcagaaaagcttacataggataccatcattgtg 63
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ggaattccacaaaactataattcaaaatcagaaaagcttacataggataccatcattgtg 678

                                                                       
Query: 64  attggcatatttaaaactcaaaatacagaagtagagacaggtataagtgatgcacgagta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 attggcatatttaaaactcaaaatacagaagtagagacaggtataagtgatgcacgagta 618

                                                                       
Query: 124 tagcttctcttatggaagtgctcagagagggtatgtgagcatggagccacatgggaacta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tagcttctcttatggaagtgctcagagagggtatgtgagcatggagccacatgggaacta 558

                                                                       
Query: 184 agacaaatacccaggtgtcacttcactctcattccatgacaaagtgtagtcaacacctca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agacaaatacccaggtgtcacttcactctcattccatgacaaagtgtagtcaacacctca 498

                                                                       
Query: 244 aaatcctgtgggtcactatctgcagcctatccgaggaatgaaccctttttttcaatgcat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaatcctgtgggtcactatctgcagcctatccgaggaatgaaccctttttttcaatgcat 438

                                                                       
Query: 304 attttaaatagacttcaaatgagtaatactaaaagcttcccccgttctgcccctcccatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 attttaaatagacttcaaatgagtaatactaaaagcttcccccgttctgcccctcccatg 378

                                                                       
Query: 364 gtattggtttgtttctcaactacatttcatgagagttgagagatttgtgataggaaggta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtattggtttgtttctcaactacatttcatgagagttgagagatttgtgataggaaggta 318

                                                                       
Query: 424 ggtggaaaataaacctccaaattctcagattctgacagttgaagattaaactgtgagcac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggtggaaaataaacctccaaattctcagattctgacagttgaagattaaactgtgagcac 258

                                                                 
Query: 484 agattgtcaggctagaagcaaagtactttcctgcatataaaggaaggaaaggtg 537
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 257 agattgtcaggctagaagcaaagtactttcctgcatataaagtaaggaaaggtg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)