MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-456C18
Chromosome	2 (Build37)
Map Location	3,794,491 - 3,794,958
singlet/doublet	singlet
Overlap gene	LOC100040257
Upstream gene	9630050M13Rik, Nmt2, Rpp38, Acbd7, Olah, Meig1, Dclre1c, Suv39h2, Hspa14, Armetl1, LOC100040219, LOC666495, 3110001A13Rik
Downstream gene	LOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452, Prpf18, LOC623483, E130319B15Rik, LOC666973
Link	Open Mouse BAC browser

Click to get alignment info.

name	9630050M13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269233 MGI:2442917
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nmt2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18108 MGI:1202298
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rpp38 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227522 MGI:2443607
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acbd7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78245 MGI:1925495
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 11 Proteins

name	Olah (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:99035 MGI:2139018
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Meig1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104362 MGI:1202878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dclre1c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227525 MGI:2441769
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Suv39h2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64707 MGI:1890396
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hspa14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50497 MGI:1354164
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Armetl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227526 MGI:3606576
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040219 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 107 ESTs, 4 Proteins

name	LOC666495 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666495
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 106 ESTs, 2 Proteins pseudo : _no_value

name	3110001A13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66540 MGI:1913790
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040257 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040257
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040163 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040163
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC666944 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666944
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	1700080N15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73489 MGI:1920739
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Frmd4a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:209630 MGI:1919850
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG634452 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:634452 MGI:3645372
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Prpf18 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67229 MGI:1914479
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC623483 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623483
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 3 Proteins

name	E130319B15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:209645 MGI:2443100
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666973 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666973
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins pseudo : _no_value

name	9630050M13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487204 GeneID:269233 MGI:2442917
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9630050M13 gene transcript_id : NM_001081161.1

name	Nmt2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679083 GeneID:18108 MGI:1202298
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : N-myristoyltransferase 2 transcript_id : NM_008708.1

name	Rpp38 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71480065 GeneID:227522 MGI:2443607
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribonuclease P/MRP 38 subunit (human) transcript_id : NM_001013376.1

name	Acbd7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94365998 GeneID:78245 MGI:1925495
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 11 Proteins product : acyl-Coenzyme A binding domain containing 7 transcript_id : XM_484966.3

name	Olah (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122330 GeneID:99035 MGI:2139018
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : oleoyl-ACP hydrolase transcript_id : NM_145921.1

name	Meig1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254275 GeneID:104362 MGI:1202878
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : meiosis expressed gene 1 transcript_id : NM_008579.4

name	Dclre1c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368826 GeneID:227525 MGI:2441769
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) transcript_id : NM_146114.2

name	Dclre1c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803344 GeneID:227525 MGI:2441769
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) transcript_id : NM_175683.3

name	Suv39h2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801869 GeneID:64707 MGI:1890396
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : suppressor of variegation 3-9 homolog 2 (Drosophila) transcript_id : NM_022724.3

name	Hspa14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82880661 GeneID:50497 MGI:1354164
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heat shock protein 14 transcript_id : NM_015765.2

name	Armetl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130456 GeneID:227526 MGI:3606576
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : arginine-rich, mutated in early stage tumors-like 1 transcript_id : NM_177647.4

name	LOC100040219 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149248850 GeneID:100040219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 107 ESTs, 4 Proteins product : similar to LSM7 homolog, U6 small nuclear RNA associated transcript_id : XM_001474285.1

name	3110001A13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383883 GeneID:66540 MGI:1913790
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 3110001A13 gene transcript_id : NM_025626.4

name	LOC100040257 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149248855 GeneID:100040257
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100040257 transcript_id : XM_001474392.1

name	1700080N15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149248857 GeneID:73489 MGI:1920739
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : RIKEN cDNA 1700080N15 gene transcript_id : XM_001474419.1

name	Frmd4a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254209 GeneID:209630 MGI:1919850
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FERM domain containing 4A transcript_id : NM_172475.2

name	Prpf18 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41053869 GeneID:67229 MGI:1914479
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PRP18 pre-mRNA processing factor 18 homolog (yeast) transcript_id : NM_026045.3

name	LOC623483 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149248847 GeneID:623483
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 3 Proteins product : similar to ribosomal protein L22 transcript_id : XM_887942.3

name	E130319B15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803215 GeneID:209645 MGI:2443100
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA E130319B15 gene transcript_id : NM_178663.3

name	9630050M13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487205 GeneID:269233 MGI:2442917
definition	codon_start : 1 product : hypothetical protein LOC269233 protein_id : NP_001074630.1

name	Nmt2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679084 CCDS:CCDS15644.1 GeneID:18108 MGI:1202298
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0004379 - glycylpeptide N-tetradecanoyltransferase activity [Evidence ISS] [Evidence TAS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0018008 - N-terminal peptidyl-glycine N-myristoylation [Evidence ISS]; GO:0006499 - N-terminal protein myristoylation [Evidence TAS] codon_start : 1 product : N-myristoyltransferase 2 protein_id : NP_032734.1

name	Rpp38 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71480066 CCDS:CCDS15645.1 GeneID:227522 MGI:2443607
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004526 - ribonuclease P activity [Evidence IEA] GO_process : GO:0008033 - tRNA processing [Evidence IEA] codon_start : 1 exception : mismatches in translation note : ribonuclease P/MRP 38kDa subunit product : ribonuclease P/MRP 38 subunit protein_id : NP_001013394.1

name	Acbd7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82796195 GeneID:78245 MGI:1925495
definition	codon_start : 1 product : acyl-Coenzyme A binding domain containing 7 protein_id : XP_484966.2

name	Olah (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122331 CCDS:CCDS15647.1 GeneID:99035 MGI:2139018
definition	GO_function : GO:0008778 - acyl-CoA thioesterase II activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004320 - oleoyl-[acyl-carrier protein] hydrolase activity [Evidence IEA] GO_process : GO:0006633 - fatty acid biosynthesis [Evidence IEA]; GO:0008610 - lipid biosynthesis [Evidence IEA] codon_start : 1 product : thioesterase domain containing 1 protein_id : NP_666033.1

name	Meig1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678854 GeneID:104362 MGI:1202878
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007126 - meiosis [Evidence IEA] codon_start : 1 product : meiosis expressed gene 1 protein_id : NP_032605.1

name	Dclre1c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28316788 CCDS:CCDS15649.1 GeneID:227525 MGI:2441769
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0008409 - 5'-3' exonuclease activity [Evidence ISS]; GO:0004519 - endonuclease activity [Evidence IEA]; GO:0004527 - exonuclease activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0000014 - single-stranded DNA specific endodeoxyribonuclease activity [Evidence ISS] GO_process : GO:0030183 - B cell differentiation [Evidence IMP]; GO:0007001 - chromosome organization and biogenesis (sensu Eukaryota) [Evidence IMP]; GO:0006310 - DNA recombination [Evidence IMP]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006302 - double-strand break repair [Evidence IMP]; GO:0006955 - immune response [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0010212 - response to ionizing radiation [Evidence IMP]; GO:0000723 - telomere maintenance [Evidence IMP] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; SNM1-like; artemis; DNA cross-link repair 1A, PSO2 homolog product : DNA cross-link repair 1A, PSO2 homolog isoform 2 protein_id : NP_783614.1

name	Dclre1c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122633 CCDS:CCDS15650.1 GeneID:227525 MGI:2441769
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0008409 - 5'-3' exonuclease activity [Evidence ISS]; GO:0004519 - endonuclease activity [Evidence IEA]; GO:0004527 - exonuclease activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0000014 - single-stranded DNA specific endodeoxyribonuclease activity [Evidence ISS] GO_process : GO:0030183 - B cell differentiation [Evidence IMP]; GO:0007001 - chromosome organization and biogenesis (sensu Eukaryota) [Evidence IMP]; GO:0006310 - DNA recombination [Evidence IMP]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006302 - double-strand break repair [Evidence IMP]; GO:0006955 - immune response [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0010212 - response to ionizing radiation [Evidence IMP]; GO:0000723 - telomere maintenance [Evidence IMP] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1; SNM1-like; artemis; DNA cross-link repair 1A, PSO2 homolog product : DNA cross-link repair 1A, PSO2 homolog isoform 1 protein_id : NP_666226.1

name	Suv39h2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543790 CCDS:CCDS15652.1 GeneID:64707 MGI:1890396
definition	GO_component : GO:0000785 - chromatin [Evidence IEA] [Evidence ISS]; GO:0005720 - nuclear heterochromatin [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003682 - chromatin binding [Evidence IDA] [Evidence IEA]; GO:0046974 - histone lysine N-methyltransferase activity (H3-K9 specific) [Evidence ISS]; GO:0018024 - histone-lysine N-methyltransferase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008276 - protein methyltransferase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006333 - chromatin assembly or disassembly [Evidence ISS] [Evidence IEA]; GO:0016568 - chromatin modification [Evidence IEA]; GO:0006338 - chromatin remodeling [Evidence ISS]; GO:0007140 - male meiosis [Evidence IEP] codon_start : 1 note : Suv39h histone methyltransferase product : suppressor of variegation 3-9 homologue 2 protein_id : NP_073561.2

name	Hspa14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82880662 CCDS:CCDS15653.1 GeneID:50497 MGI:1354164
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; heat shock protein, 70 kDa 4; heat shock protein 4; heat shock 70kDa protein 14 product : heat shock 70kDa protein 14 isoform 1 protein_id : NP_056580.2

name	Armetl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244056 CCDS:CCDS15654.1 GeneID:227526 MGI:3606576
definition	codon_start : 1 product : arginine-rich, mutated in early stage tumors-like 1 protein_id : NP_808315.1

name	LOC100040219 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149248851 GeneID:100040219
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474335.1

name	3110001A13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385088 CCDS:CCDS15655.1 GeneID:66540 MGI:1913790
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : novel DUF1151 domain containing protein product : hypothetical protein LOC66540 protein_id : NP_079902.1

name	LOC100040257 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149248856 GeneID:100040257
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474442.1

name	1700080N15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149248858 GeneID:73489 MGI:1920739
definition	codon_start : 1 product : hypothetical protein LOC73489 protein_id : XP_001474469.1

name	Frmd4a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254210 CCDS:CCDS15656.1 GeneID:209630 MGI:1919850
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008092 - cytoskeletal protein binding [Evidence IEA] codon_start : 1 product : FERM domain containing 4A protein_id : NP_766063.2

name	Prpf18 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254503 CCDS:CCDS15657.1 GeneID:67229 MGI:1914479
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA] codon_start : 1 note : HPRP18 homolog product : PRP18 pre-mRNA processing factor 18 homolog protein_id : NP_080321.2

name	LOC623483 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149248848 GeneID:623483
definition	codon_start : 1 product : similar to ribosomal protein L22 protein_id : XP_893035.2

name	E130319B15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542577 CCDS:CCDS15658.1 GeneID:209645 MGI:2443100
definition	codon_start : 1 product : hypothetical protein LOC209645 protein_id : NP_848778.1

name	LOC100040163 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040163
definition	number : 3 pseudo : _no_value

name	LOC100040163 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040163
definition	number : 2 pseudo : _no_value

name	LOC100040163 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040163
definition	number : 1 pseudo : _no_value

name	LOC666944 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666944
definition	number : 1 pseudo : _no_value

name	EG634452 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:634452
definition	number : 3 pseudo : _no_value

name	EG634452 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:634452
definition	number : 2 pseudo : _no_value

name	EG634452 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:634452
definition	number : 1 pseudo : _no_value

name	LOC666495 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149248854 GeneID:666495
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 106 ESTs, 2 Proteins product : similar to Presenilin associated, rhomboid-like pseudo : _no_value transcript_id : XR_031723.1

name	LOC666973 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149248849 GeneID:666973
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins product : similar to Protein regulator of cytokinesis 1 pseudo : _no_value transcript_id : XR_031694.1

clone name	MSMg01-090L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-204F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035A01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-250B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309H23
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-456C18.T7 (MSMg01no456_c18.b1)	MSMg01-456C18.TJ (MSMg01no456_c18.g1)
ACC	AG542537	AG542538
length	752	759
length of high quality (start - end)	475 (42 - 516)	420 (78 - 497)
definition	CHROMAT_FILE: MSMg01no456_c18.b1 PHD_FILE: MSMg01no456_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:54 2005	CHROMAT_FILE: MSMg01no456_c18.g1 PHD_FILE: MSMg01no456_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:54 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGG AATTCCTTTTTATCTTTTCCTCTGTAGGAATTCATCTGTGTCCTCAGTTC CCCCGATTGGCTCACTTTATGATGGTTTCTGTCTGAATACAAAGTCTCCG TGGTTCCTGCAAGTCCTCACTGTCTGATTCATTGCTGTTGCTCTGAGATC TATCATCAACTACCAAATCTTGAAAATTTGCAAGAAATTGAAAGCTCTCC AGAGGAGACAGGGAAGGGAAATAAATGTATCCTCAGATGCCCTCGCTCAC TCAATCTGACAAGCGTAGATTATGTTGTTTGAAATACTTTCCAGACTGCT AGGAAGTGTCCCCAAGTGGGGCGCATGAAGGGAATAAAGCCTTTGTACCA TCGGACACTGCCTCACTGTTTATGAAATCACAGTTTGTAAATGAAAGACT TATTAAATCATCTGGCCCATGCTGCTAGGACAGACTTTTCTCATTCTCAT CCTTCATCTTGGCCAGTGAGTGGTATTTGGGGTTTGACTGATCCCCAGAG CTTGTGTAAATCAAGGCTTGCTGCACGCCCTATGTCGAATCTAATCCTTC GTTATTTCTTGCTTCCCCTATTTCTCCCTAGTTAATCCTTTAAATTTCTT TCGCCTCCGTTAATCTTTAAACTACCTTATTCCTATTCATTCTTTCTTTA ACCCCCACCCCTTTTCACCACCTTTCTTCTTTCTTCTCTCCACCCTCCTC CT	NCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC TGAGAAACACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGC AAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAG ATCAAAATTCAGGTGACAGCAGATGCTGGCGAAGATGTGGAGAAAAAGGA ACACTCCTCCATTGTTGGTGGGATTTCAAGCTTGTACAACCACTCTGGAA ATCAGTCTTTTGGTTCATCAGATTATTGGACATGGTACTATCGGAGGATC CCGCAATATCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTAGTTAG AAAGAAACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGACAG GAGCTGGAAAGAACCCAGATGCCCCTCAAGAGAGGAATGGATACAAAATA TGTGGTACATTTACACAATGGAGTACTACTCAGCTACTAATAAGAATGAA TTTATGAAATTCCTTAGGCAAATGGTTGGACTGGGAGGGCATTATCCCGG GTGAGGGAACCCAATCCTTTAGGAACTCCATGGAGTTGTCCCCCCTGAAA ATCGGGTATTTCTCCTTAAATCTTATATACCCTCCATATAATTTCTTCTT TGGCGAATTCCCTGCACTTCTCGAAAAATCATCCAGTCCGTGGGGTGTCT TTTGCCCCG
quality values	Open. Hide. 6 6 8 6 8 8 8 9 9 19 27 33 32 37 29 19 25 13 17 25 25 25 30 39 39 20 20 20 16 13 12 12 11 8 8 8 8 8 8 11 15 15 25 25 31 31 41 39 35 28 28 29 33 37 30 44 44 43 26 21 22 13 13 12 14 21 30 36 42 41 48 43 48 48 57 57 57 36 36 37 37 37 40 47 50 53 57 57 57 57 59 57 42 42 42 42 42 42 57 57 57 68 68 68 68 68 53 53 68 44 42 24 31 37 41 48 57 57 57 57 57 57 57 57 57 57 57 50 68 68 68 68 68 68 68 68 57 48 48 47 47 48 48 57 68 57 57 57 57 50 59 59 59 59 59 57 57 57 57 57 57 57 57 68 57 50 50 37 37 43 50 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 50 57 52 52 52 57 57 57 57 59 59 59 59 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 57 44 43 43 48 43 48 48 48 48 57 57 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 44 47 48 48 48 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 50 44 34 26 18 15 13 12 15 11 11 11 22 25 35 47 47 50 50 48 48 48 48 59 59 59 59 59 59 59 59 59 57 57 43 43 43 43 59 59 59 59 47 43 39 39 35 35 41 41 42 47 48 48 57 48 54 54 59 59 47 35 35 32 44 41 41 43 57 44 44 37 37 35 42 42 57 57 57 57 57 68 57 57 57 59 57 57 57 57 43 39 39 34 32 35 35 35 43 43 57 57 57 54 43 44 35 35 35 43 43 57 50 54 54 57 57 54 50 57 44 43 40 40 44 39 37 30 28 11 12 12 28 32 44 46 43 44 43 57 46 57 57 57 59 59 59 57 44 44 32 36 37 48 44 57 46 46 39 43 46 46 54 57 57 57 54 57 57 57 43 43 32 39 43 48 48 57 57 57 57 57 44 43 35 35 35 39 37 57 48 48 48 48 48 43 41 37 37 37 39 34 34 32 25 25 13 17 10 10 10 17 21 35 23 27 11 11 15 25 22 15 10 10 13 12 19 14 20 20 16 15 10 10 10 15 16 9 9 9 9 8 9 8 8 8 8 8 17 10 8 8 8 8 8 8 8 8 8 8 10 8 8 8 10 8 12 7 6 8 6 6 8 8 8 8 8 8 8 8 8 10 9 8 8 8 8 8 7 8 8 8 7 8 8 8 9 8 8 8 8 8 6 6 8 8 13 8 8 8 8 8 8 15 14 8 8 6 7 8 8 10 11 11 11 13 13 10 8 8 8 10 8 8 9 9 9 8 8 8 10 8 8 8 8 8 8 13 12 10 10 10 9 10 11 13 11 10 8 10 6 6 8 8 9 9 9 10 10 18 19 24 23 10 8 8 6 6 8 8 9 9 14 9 9 10 10 9 10 10 15 9 9 9 10 8 9 10 9 9 8 8 6 9 10 15 25 13 10 10 10 10 9 8 10 8 8 8 13 11 13 11 10 8 9 10 8 8 8 8 8 8 8 8 6 6 8 8 12 13 13 15 18 12 12	Open. Hide. 0 3 11 7 7 9 12 15 10 10 10 9 14 16 16 9 9 9 14 18 36 39 39 39 37 37 31 27 28 37 37 37 27 27 9 9 9 9 9 8 8 8 16 21 19 39 28 28 37 37 36 36 38 36 36 33 59 59 59 47 27 27 13 10 10 10 11 10 12 12 22 15 20 27 28 28 29 33 36 36 36 35 50 50 50 50 37 42 40 40 40 42 57 50 50 50 48 57 68 68 68 57 57 57 57 54 54 68 68 68 50 68 68 68 68 68 50 50 50 50 50 50 50 50 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 50 51 68 48 48 48 50 50 50 57 57 57 57 57 57 57 57 57 68 68 57 57 57 57 50 51 50 50 50 57 57 57 57 57 57 57 57 68 68 68 68 68 68 57 57 57 57 57 57 57 68 57 57 57 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 47 54 54 57 57 54 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 48 48 48 57 57 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 57 53 53 50 50 50 50 47 41 27 23 11 11 11 12 12 23 12 17 19 29 41 30 50 59 59 59 59 59 59 59 59 59 59 59 53 53 53 48 48 48 59 59 59 59 59 59 59 68 68 59 59 54 54 48 59 59 59 59 59 57 59 59 59 59 59 59 57 59 57 59 57 54 48 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 68 68 68 59 57 57 48 48 48 48 48 59 59 54 54 54 57 57 57 57 57 44 44 36 37 39 43 59 59 59 43 43 43 59 59 59 57 57 57 57 48 48 48 57 57 57 57 48 48 48 53 44 43 43 43 43 59 43 46 43 41 41 41 31 31 32 37 36 37 37 32 28 31 39 30 30 18 17 17 30 30 47 47 43 30 17 18 21 18 18 25 30 34 28 24 13 15 7 7 7 13 8 10 10 14 18 19 13 15 17 41 23 22 9 10 9 9 9 14 17 25 27 22 22 20 26 21 22 15 13 10 10 11 17 26 21 21 15 8 7 7 7 10 10 12 11 13 11 11 12 23 24 28 21 21 10 9 9 14 10 14 11 10 11 10 8 10 8 8 9 8 14 13 11 8 8 8 8 8 10 10 8 8 8 8 8 12 13 8 8 8 8 8 8 8 8 8 8 8 9 9 9 10 12 12 16 11 12 12 8 8 8 8 8 8 11 10 10 10 10 11 14 17 11 10 8 8 6 8 8 8 7 8 7 7 8 8 6 6 6 8 8 10 10 11 18 11 10 8 11 11 8 8 8 8 8 8 8 8 9 10 10 11 12 11 11 11 11 9 8 8 8 8 8 8 6 6 8 8 12 18 10 10 10 10 10 13 13 10 10 10 10 7 10 7 9 9 9 9 8 12 10 10 10 11 12 12 14 16 13 8 8 8 8 8 8 10 10 10 8 10 10 10 11 11 18 15 15 12 10 9 8 6 6 6 6 8 8 9 9 9 14 10 10 10 8 8 8 9 9 11 15 12 20 15 12 8 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no456_c18.b1 MSMg01no456_c18.b1 CHROMAT_FILE:
MSMg01no456_c18.b1 PHD_FILE: MSMg01no456_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:54 2005
         (475 letters)



>mm_chr2_3794283_3795158
          Length = 876

 Score =  851 bits (440), Expect = 0.0
 Identities = 461/468 (98%), Gaps = 1/468 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattcctttttatctttt-cctctgtaggaattcatctgtgtcctcagttcccccgatt 67
           |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattcctttttatttttttcctctgtaggaattcatctgtgtcctcagttcccccgatt 268

                                                                       
Query: 68  ggctcactttatgatggtttctgtctgaatacaaagtctccgtggttcctgcaagtcctc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 269 ggctcactttatgatggtttctgtctgaatacaaagtctccgtggttcctgcaagtcctt 328

                                                                       
Query: 128 actgtctgattcattgctgttgctctgagatctatcatcaactaccaaatcttgaaaatt 187
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gctgtctgattcattgctgttgctctgagatctatcatcaactaccaaatcttgaaaatt 388

                                                                       
Query: 188 tgcaagaaattgaaagctctccagaggagacagggaagggaaataaatgtatcctcagat 247
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 389 tgcaagaaattgaaagctctccaggggagacagggaagggaaataaatgtatcctcagat 448

                                                                       
Query: 248 gccctcgctcactcaatctgacaagcgtagattatgttgtttgaaatactttccagactg 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gccctcgctcactcaatctgacaagcgtagattatgttgtttgaaatactttccagactg 508

                                                                       
Query: 308 ctaggaagtgtccccaagtggggcgcatgaagggaataaagcctttgtaccatcggacac 367
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 509 ctaggaagtgtccccaagtggggggcatgaagggaataaagcctttgtaccatcggacac 568

                                                                       
Query: 368 tgcctcactgtttatgaaatcacagtttgtaaatgaaagacttattaaatcatctggccc 427
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 569 tgcctcactgtttatgaaatcacagtttggaaatgaaagacttattaaatcatctggccc 628

                                                           
Query: 428 atgctgctaggacagacttttctcattctcatccttcatcttggccag 475
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 atgctgctaggacagacttttctcattctcatccttcatcttggccag 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 876
Length adjustment: 10
Effective length of query: 465
Effective length of database: 866
Effective search space:   402690
Effective search space used:   402690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information