BAC Information

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BAC

Clone NameMSMg01-456H23
Chromosome2 (Build37)
Map Location 167,516,151 - 167,680,606
singlet/doubletdoublet
Overlap genenone
Upstream geneBC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb
Downstream geneLOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2, Atp9a, Sall4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456H23.T7 (MSMg01no456_h23.b1)MSMg01-456H23.TJ (MSMg01no456_h23.g1)
ACCAG542786AG542787
length763849
length of high quality
(start - end)		445 (72 - 516)177 (80 - 256)
definitionCHROMAT_FILE: MSMg01no456_h23.b1 PHD_FILE: MSMg01no456_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:20 2005CHROMAT_FILE: MSMg01no456_h23.g1 PHD_FILE: MSMg01no456_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(167,680,162 - 167,680,606)(167,516,151 - 167,516,327)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAGAGGAGGCGCGGAA
TTCATTATTTCACCTGCACACCCCACATGGGTAACTGTCATGGTAAAGAC
AGATCTTCACAGTGTAACAGCAAAACACAGGACTCAGGTCACCATTCAGT
CAGAAAATCCCCAATAAATAGATGAAATGAACCCTGCTCCTCTCTTCCAT
AAAGTGGAGGAGCGGAACCTGGGCTGGCAGAACGGCTTCATGAGTTCAAT
AGGTACTGGCCACCCTTTTCTCTATTGCTCCTCTTTGGCCCAAGATAGTC
ACACAGATTCTATTCATCACATCTGCTTTCCAAACAACCAGAAGGAAGTT
GGTAGGAAGAGACACCCTTCTCTATAGACATGTCTTAGCAGTTACTCAGA
TGCTATTGCCCACAACTTAGTCACATGGCCACACATAGCTGCAAGGGAGT
CAGGAAAGTGTAGTGTTCCCCACCCCATCCCACCCCCTGCCTCCGACTGA
CCCATAATCTAGCAAAAGTTTGGGATTCCTATTGTGAAAGAAGAGAGAGA
GAGAGAGAGAGAGACAGACTGACCGACTGACTGACTGAGACAGAGACCGA
GAGAGAGCCAAGCTTTATGGCAGGGGCAGCTAGGTAACCTAATTTTATTT
ATTACCAATGGAAAACACCTATCCTTTTAAGAAGCCTTCTGTCTATAGGG
GTACCATTTGTATAATTGGGGGGGTAATAATAAAAAGGGTTTTGGTGAAT
CCCTATTCAACAC

TTTTCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGTGACTCAGCACCCACGG
GTGCTGGGGGACTTGCTAGAAACCTTGCTTGGGATGGGCCGCCCTCGGCT
TGGTTTGAGTGTCAGACTTGTGTTGAGAGGACTAGACATTCTGTAGGAAA
GGCTAGTCCAGACAGCTGGGTCAGGGCAGGTGAGTACTGTGTGTTTGGTG
GTGTGGGTTAGACCGCACGCCTGTTTGGTGTCTGTGTCCCTGTGTATCTG
GAAGAGAGATTGGGTCGAGAGTTTTTTGTTTTTTAACACCGCCTACTCTG
GTTTGCCTTTTCTCTCTTTCTTCTTCCGCCCTGACGGTTACTATTAGCCT
TCTCTTACTGTTTTTCGAGCGTTTTCACCCCCCCCACTTTAATCTTCCTT
TCTCCTTTCTCTCCATTTTGTCTGTTCTACTTCTTTGTCTGTCTCCTTTG
CCCTCTTTTCATTTTTCAAATCTTTGTCTGCGCTTTTTTTGTGCCCTTTT
TTCCCCTCTTCTTCCTTCTCTTTTCTTTTCACTCTTTCTTCTGTTTTTCT
CTCTCTCCTCTCATGCACCTTTTTATATTTCACTCTTTTTTCCTCTCCCT
TTCTTTTTCCCCTCCTTTTTTTTCTTCCTCCTTTTCCCCCTCCTCTCCTC
TCCCCTCCCATTTCCCCTTTCTTCTTTTCCTCCTTTTCCTCTTTTTTTTC
TTCCCCCTTCTCTCTCTCTTTTTTCTGACCCTTTCTCTATTTTATTCTTT
TTCTTCTTCCCTCCTCCCTTCTTTTTCTCCCCTTCCCTTTCTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_h23.b1 MSMg01no456_h23.b1 CHROMAT_FILE:
MSMg01no456_h23.b1 PHD_FILE: MSMg01no456_h23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:20 2005
         (445 letters)



>mm_chr2_167680086_167680930
          Length = 845

 Score =  799 bits (413), Expect = 0.0
 Identities = 437/445 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccacatgggtaactgtcatggtaaagacagatcttcacagtgtaacagcaaaacacagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cccacatgggtaactgtcatggtaaagacagatcttcacagtgtaacagcaaaacacagg 462

                                                                       
Query: 61  actcaggtcaccattcagtcagaaaatccccaataaatagatgaaatgaaccctgctcct 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 actcaggtcaccactcagtcagaaaatccccaataaatagatgaaatgaaccctgctcct 402

                                                                       
Query: 121 ctcttccataaagtggaggagcggaacctgggctggcagaacggcttcatgagttcaata 180
           |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||
Sbjct: 401 ctcttccataaagtggaggagcggtacctgggctggcagaatggcttcatgagttcatta 342

                                                                       
Query: 181 ggtactggccacccttttctctattgctcctctttggcccaagatagtcacacagattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggtactggccacccttttctctattgctcctctttggcccaagatagtcacacagattct 282

                                                                       
Query: 241 attcatcacatctgctttccaaacaaccagaaggaagttggtaggaagagacacccttct 300
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 agccatcacatctgctttccaaacaaccagaaggaagttggtaggaagagacacccttct 222

                                                                       
Query: 301 ctatagacatgtcttagcagttactcagatgctattgcccacaacttagtcacatggcca 360
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 221 ctatagacatgtcttagcagttactcagatgctattgcccagaatttagtcacatggcca 162

                                                                       
Query: 361 cacatagctgcaagggagtcaggaaagtgtagtgttccccaccccatcccaccccctgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 cacatagctgcaagggagtcaggaaagtgtagtgttccccaccccatcccaccccctgcc 102

                                    
Query: 421 tccgactgacccataatctagcaaa 445
           |||||||||||||||||||||||||
Sbjct: 101 tccgactgacccataatctagcaaa 77


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no456_h23.g1 MSMg01no456_h23.g1 CHROMAT_FILE:
MSMg01no456_h23.g1 PHD_FILE: MSMg01no456_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:20 2005
         (177 letters)



>mm_chr2_167515951_167516527
          Length = 577

 Score =  319 bits (165), Expect = 5e-92
 Identities = 174/177 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggtgactcagcacccacgggtgctgggggacttgctagaaaccttgcttgggatgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 201 agggtgactcagcacccacgggtgctgggggacttgctagaaaccctgcttgggacgggc 260

                                                                       
Query: 61  cgccctcggcttggtttgagtgtcagacttgtgttgagaggactagacattctgtaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgccctcggcttggtttgagtgtcagacttgtgttgagaggactagacattctgtaggaa 320

                                                                    
Query: 121 aggctagtccagacagctgggtcagggcaggtgagtactgtgtgtttggtggtgtgg 177
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 aggctagtccagacagctgggtcagggcaggtgagttctgtgtgtttggtggtgtgg 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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