BAC Information

Click to search

BAC

Clone NameMSMg01-457H02
Chromosome2 (Build37)
Map Location 13,452,741 - 13,453,139
singlet/doubletsinglet
Overlap geneTrdmt1
Upstream geneLOC100040837, Pter, C1ql3, Rsu1, Cubn
Downstream geneVim, St8sia6, Ptpla, Stam, 2010003H20Rik, Mrc1, Slc39a12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457H02.T7 (MSMg01no457_h02.b1)MSMg01-457H02.TJ (MSMg01no457_h02.g1)
ACCAG543509AG543510
length742773
length of high quality
(start - end)
279 (50 - 328)399 (81 - 479)
definitionCHROMAT_FILE: MSMg01no457_h02.b1 PHD_FILE: MSMg01no457_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:38 2005CHROMAT_FILE: MSMg01no457_h02.g1 PHD_FILE: MSMg01no457_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAA
CCAGTAACCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACT
AAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACA
TAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAG
GGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGA
TATGATAGTATATAGAAGTGACCCTAGAAAGTCTACCAGAGAACTCCTAA
ACCTGATAAACGGCTTCGGTGAAGTAGCTGGATATAGAATAGACTCAGAC
GAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAAT
TAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTG
GCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAA
TCTCTGAAGAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCC
ATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCCA
TAGCTTTCTACTGATTCTTTGTACACTCCAACTAAATTCTCTACCAATTC
CCTCAACGAATTGGTACGGAGGATTTGGCCAATTTTGTCGGG
TTCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTATGTATTAAAAACTCTA
ACTATCAGGCCAGGCGTGGTGGTGCACGCCTTTAATCCCAGCACTCAGGA
GGCAGAGGCAGGCGGATTTCTGAGTTCGAAGCCAGCCTAGTCTACAGAGT
GAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACC
AAACCAAAACCAAAACCAAACAAACAAAAAAGACCTCTAACTATCAAAGA
CACATATTGTTGATGTGAGAACTGACTTTTGTATACCACTGAGAAAAGAG
CCCAGAAATACACCCATGAATACGCGATCTATTTCTTGTAACATTCCAAG
GAAACTGAGTAGAAGAATACTCTTTTTAGTGAATAATCAACTTTACGTTC
CCTTGAGAGGAAAAGGGGTTGGAACTCATTTGGTAAACTACTTTATTCTT
TATCTCTGAACGTATTGCAAATCCCAATGTTTTATTACACCTTCCTATTT
TGATTCATATTATTCTTTCATCTTTTTCCCGAATAATTTGGTTAATGATA
GGTTTTTTTCTTTTCTTCTGGATCCTGGTTCTTTCGTTCCGTTTTTATTT
GCCCTGGATTTTTTTTCTTCTCTTTTGTTTCTTCTTCTTCGTTAATTCCT
TGTCAATCCTTTTTTTTCATTTGTATCTTATTGTTTTTTGTCTTTTTTTT
TTTTAGACTTTCCTTTATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_h02.g1 MSMg01no457_h02.g1 CHROMAT_FILE:
MSMg01no457_h02.g1 PHD_FILE: MSMg01no457_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:39 2005
         (399 letters)



>mm_chr2_13452541_13453339
          Length = 799

 Score =  627 bits (324), Expect = 0.0
 Identities = 381/402 (94%), Gaps = 6/402 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtatgtattaaaaactctaactatcaggccaggcgtggtggtgcacgcctttaatccca 60
           ||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||
Sbjct: 201 agtatgtattaaaaactctaactatcaggccgggcgtggtggcgcactcctttaatccca 260

                                                                       
Query: 61  gcactcaggaggcagaggcaggcggatttctgagttcgaagccagcctagtctacagagt 120
           |||||| ||||||||||||||| |||||||||| ||||| |||||||| ||||||| |||
Sbjct: 261 gcactcgggaggcagaggcaggaggatttctgatttcgaggccagcctggtctacaaagt 320

                                                                       
Query: 121 gagttccaggacagccagggctatacagagaaaccctgtctcgaaaaaccaaaccaaaac 180
           |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| 
Sbjct: 321 gagttccaggacagccagggatatacagagaagccctgtctcgaaaaaccaaaccaaaat 380

                                                                       
Query: 181 caaaaccaaacaaacaaaaaaga-cctctaactatcaaagacacatattgttgatgtgag 239
           ||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct: 381 caaaaccaaacaaacaaaaaaaaacctctaactatcaaagagacatattgttgatgtgag 440

                                                                       
Query: 240 aactgacttttgtataccactgagaaaagagcccagaaatacacccatgaatacgcgatc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactgacttttgtataccactgagaaaagagcccagaaatacacccatgaatacgcgatc 500

                                                                       
Query: 300 tatttcttgtaacattccaaggaaactgagtagaagaatact--ctttttagtgaataat 357
           ||||||||||||||||||||||||||||||||| ||||||||  |||   ||||||||||
Sbjct: 501 tatttcttgtaacattccaaggaaactgagtaggagaatactgtctt---agtgaataat 557

                                                     
Query: 358 caactttacgttcccttgagaggaaaaggggttggaactcat 399
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 caactttacgttcccttgagaggaaaaggggttggaactcat 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)