BAC Information

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BAC

Clone NameMSMg01-457M02
Chromosome2 (Build37)
Map Location 161,933,221 - 162,112,016
singlet/doubletdoublet
Overlap genePtprt
Upstream geneChd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457M02.T7 (MSMg01no457_m02.b1)MSMg01-457M02.TJ (MSMg01no457_m02.g1)
ACCAG543746AG543747
length901762
length of high quality
(start - end)
224 (49 - 272)361 (82 - 442)
definitionCHROMAT_FILE: MSMg01no457_m02.b1 PHD_FILE: MSMg01no457_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:05 2005CHROMAT_FILE: MSMg01no457_m02.g1 PHD_FILE: MSMg01no457_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,111,799 - 162,112,016)(161,933,221 - 161,933,581)
sequence
TGCCGATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATC
CGCGGAATTCTTGAAGATTCATGCATACATACACACATGCACATACACAT
ACACGTATACACACTTGTGAAAAATACCCTTTCGTCCTCACCTTCCTCAG
AAGGAGTCCAAGACAACAGTCAGGTTAGCCATGCTTCCAAGTAAGCCATG
TGTCCTGGCTCAGCAGTGACTAATGCTTTAGTTTCTGAGAAGGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTTTTTTTCTCTTCTTTTCTTTTTTTTT
TTCCTTTCTTTCTTTTTCCCATTTTTTTTTTTTTCCCTTTCTATCATTCT
TATTTCTTTTCACATTCTTTCATTCTCTCTCCACCCTCTACTGTTTTTTT
CCATGTTTGTCTTTGTATTCGATTTATTCTTCTCTTTTTTTCCTTCCTCT
CTATTTTTTTTTTCATTCTCATTTTTTTTTTTCCCCACTTTTATTATTCT
TTTTTATTTATTCTTTATACATTTATTGTTTCTTTTCTTATTCTTTTTTT
TTTTGTTCATCATCTCCACCTTATTTTGTTTCCCTGTCTCTNATTTTTCT
TTTGACTGTTTTTCTCGGCTGTTTTTTATGTTATTTGTAGTCTTTCATTT
ATTTTTTTTTTTGCTACCTGCTTATCTCCTTAGTTTTTCTCCTCTTTGTT
TTCTCCCTTATTATGTTCTTTTTCTACTCTTATTTGTCTCCTCTTTCATG
ATTTCATCTGCACCCACCTTTCACCCTTCCTTATCTAGCATCTTCTCTAC
TTTTCGACCAATACGTTTCTTTCCTCTTTTCCCCCCTTTTCTCCCNCCTT
TCCTTCCCGCATCGTCTTCTCTTGTGTTTTTTTTATTTCTCTCTTCTTTT
G
NNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGACACATATTCTTAAC
CTGATCAAAGTCCATCTTTATCAAAGATCACTAGAATCCTCAGAATCAAA
CGGATATGATCACTGGACAAACCAATAATGCCCTTGCTCCTTGTAATTAT
CTGAGGAACCAAGGGCTTTATCTACCGTAAAAAGTGTTTGTTGAGTGGAA
GGAGATATAGCGCTCCCTTAATTTCCTCTGAAGTTAGAGACAACCAAGCT
GAGTTAGTATGAGAATCTACTTAACACTCAAGGGTCTGAAGCACAAAGCA
GTGAGTGCCTTACTTCTGCTCCTGGATGCAGGCAAGGTTTACTTACCTCA
GGTCTATACCTGTCATGCAGAAGGATGTGAATGAAAGCAGTAAGTGGCCA
TAACTAACTGTTGGCCCCTTACAAAGAATGCTCCCATTTGCTTATATCTC
ATTGATAAAAACTTAGTTATATGGTCGTACTCAACTGCTTGTTGTCCTGC
AGAAATGTTTTCTTTTTTCCCTTTACTTATTTTGATCCTCCCTTAACAAC
ATGGTTATAATGGTAAGCTCCGTATTTTTTTTTAGTTTCTGGTTTTGTCT
CTCAACTAATGTTCAGGGTTTCTGATTTCCTCTTTTCCTTCCCATATTTT
TTTTTTTTTTCCTGTTCTTCATTGTTTTTTTTTTCTGTGTTCTATTTTGT
CTCCTTCTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_m02.b1 MSMg01no457_m02.b1 CHROMAT_FILE:
MSMg01no457_m02.b1 PHD_FILE: MSMg01no457_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:05 2005
         (224 letters)



>mm_chr2_162111563_162112186
          Length = 624

 Score =  398 bits (206), Expect = e-115
 Identities = 215/218 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcttgaagattcatgcatacatacacacatgcacatacacatacacgtatacacac 66
           |||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 454 gaattcttgaagacacatgcatacatacacacatgcacatgcacatacacgtatacacac 395

                                                                       
Query: 67  ttgtgaaaaataccctttcgtcctcaccttcctcagaaggagtccaagacaacagtcagg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttgtgaaaaataccctttcgtcctcaccttcctcagaaggagtccaagacaacagtcagg 335

                                                                       
Query: 127 ttagccatgcttccaagtaagccatgtgtcctggctcagcagtgactaatgctttagttt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttagccatgcttccaagtaagccatgtgtcctggctcagcagtgactaatgctttagttt 275

                                                 
Query: 187 ctgagaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 224
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ctgagaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 237


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no457_m02.g1 MSMg01no457_m02.g1 CHROMAT_FILE:
MSMg01no457_m02.g1 PHD_FILE: MSMg01no457_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:05 2005
         (361 letters)



>mm_chr2_161933021_161933781
          Length = 761

 Score =  698 bits (361), Expect = 0.0
 Identities = 361/361 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgacacatattcttaacctgatcaaagtccatctttatcaaagatcactagaatcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgacacatattcttaacctgatcaaagtccatctttatcaaagatcactagaatcctc 260

                                                                       
Query: 61  agaatcaaacggatatgatcactggacaaaccaataatgcccttgctccttgtaattatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaatcaaacggatatgatcactggacaaaccaataatgcccttgctccttgtaattatc 320

                                                                       
Query: 121 tgaggaaccaagggctttatctaccgtaaaaagtgtttgttgagtggaaggagatatagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaggaaccaagggctttatctaccgtaaaaagtgtttgttgagtggaaggagatatagc 380

                                                                       
Query: 181 gctcccttaatttcctctgaagttagagacaaccaagctgagttagtatgagaatctact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcccttaatttcctctgaagttagagacaaccaagctgagttagtatgagaatctact 440

                                                                       
Query: 241 taacactcaagggtctgaagcacaaagcagtgagtgccttacttctgctcctggatgcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taacactcaagggtctgaagcacaaagcagtgagtgccttacttctgctcctggatgcag 500

                                                                       
Query: 301 gcaaggtttacttacctcaggtctatacctgtcatgcagaaggatgtgaatgaaagcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaaggtttacttacctcaggtctatacctgtcatgcagaaggatgtgaatgaaagcagt 560

            
Query: 361 a 361
           |
Sbjct: 561 a 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)