BAC Information

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BAC

Clone NameMSMg01-457M04
Chromosome2 (Build37)
Map Location 122,167,583 - 122,167,926
singlet/doubletsinglet
Overlap geneDuox1
Upstream geneHisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1
Downstream geneShf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457M04.T7 (MSMg01no457_m04.b1)MSMg01-457M04.TJ (MSMg01no457_m04.g1)
ACCAG543750AG543751
length767778
length of high quality
(start - end)
344 (76 - 419)432 (82 - 513)
definitionCHROMAT_FILE: MSMg01no457_m04.b1 PHD_FILE: MSMg01no457_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:05 2005CHROMAT_FILE: MSMg01no457_m04.g1 PHD_FILE: MSMg01no457_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTTCCCTTTTCAAGAGTTCCAAATTTTTAAAGCTCTCC
TTCATGGTGGGGCAGTTCAGTTTCTGAGTTGCCAGCTTAGACATTCTTTC
TCAAGGTCTGCTCTATGCTGGGGTCTTTTACTTATAACTTTCCTTTCTGC
CCAGAGCCAAGTGCCTTCCTCCACCCCCTGTGATAAGTGATAAGATAGTT
GCTATGTTCCCGATCTCCCTCCCCACATATAAAAGGTTCCCAATCTGCCA
GGCTAGAGCTGCCCAACAATCCAGTGTTGTCTACAATAGCAATGAATCAG
GAAGTAGTCTTGGACTTAGGGTATCAAGCTAGCCACTCTACAGGATCTTC
CCTCTAGTTTTATCACCAGGAAACAAGAAACAGCATTTTCGTAGCAGAAT
CTAAGGGCATAAGGCTAGGGATCCACACATTTTTGAATAGGCAGGAAATT
AGTGGGTAGGTCAGGATATATCTCTTTCTTGGCCTCCTTATCTAGCCAGT
GGTTCTTTTTGGCCTTATATATTCTTTTCCCCTTGACTTTATTTTACCTC
TCTACTCCTCTAGTCTTTGTTCAATTTTTTTTCCTAGTTTATCTCCTTGC
TTTTTCTCTTCTTCCTTCGTTTTCTTCGTACTATCTGTTTTTATTCCTCT
TTCCCCCTTTAATCTTTACTTACTACCCTATCTTTTCCTTCTCTTCTTTG
TTTTCTTCTGTTCTTTT
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATTCAGTAAGAAACCT
GCCTCAAAAAATAAGATGGAGAGTGATGAGGAAGATACTTATAGGAGACC
TCTGATAGCCACATGCACATCTCTGGGCATACCTATACACACACAGACAC
AGACAACACACAGACAAAGACACACACACACCAACACACACACACACACA
CACACACACACACACACACACACACACACACACACAGGCGCTTGAACATT
TCCACAAGTCTCTTTGCAATTAGTTCTTTCTGTATAGCTCCAGCCCTTAC
TCCTTGCTAATCTGCTTTATTTCAGGTTTGATGTGTCTTTTTGAATTTTT
AATTTAATGCAGATCACACATGCCAGTATTTTGTATCTAGACTTTTGTAC
AAAGCACAGTGCTTCCCTTGATTCACCTTTGTTGCACATGGCAGTAATTT
TGTTTAATGGATACATCACAATGTGTTTACCTATTCTCCCGCTGATGGAC
ATTTGGGGAGATTACCCTTCTTGCTATAATAAATAAAGATGTGGGGGATT
TGTTTATATAATTTTTATGTTAAAAACTTTTTCATTTGTTTCTTACAATG
TATCTCTTCTCTTTTTCCACAATTGTTTATTCTTTTTTCTTTTTCTTTTT
AACGCTGTTCACTGTCTTCTACCCCCCTCTCCTTTGGACCTATTTGTCGT
TAATCCCCACTTTCTCTTCCTTCTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_m04.b1 MSMg01no457_m04.b1 CHROMAT_FILE:
MSMg01no457_m04.b1 PHD_FILE: MSMg01no457_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:05 2005
         (344 letters)



>mm_chr2_122167383_122168126
          Length = 744

 Score =  665 bits (344), Expect = 0.0
 Identities = 344/344 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagttccaaatttttaaagctctccttcatggtggggcagttcagtttctgagttgccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gagttccaaatttttaaagctctccttcatggtggggcagttcagtttctgagttgccag 485

                                                                       
Query: 61  cttagacattctttctcaaggtctgctctatgctggggtcttttacttataactttcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cttagacattctttctcaaggtctgctctatgctggggtcttttacttataactttcctt 425

                                                                       
Query: 121 tctgcccagagccaagtgccttcctccaccccctgtgataagtgataagatagttgctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tctgcccagagccaagtgccttcctccaccccctgtgataagtgataagatagttgctat 365

                                                                       
Query: 181 gttcccgatctccctccccacatataaaaggttcccaatctgccaggctagagctgccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gttcccgatctccctccccacatataaaaggttcccaatctgccaggctagagctgccca 305

                                                                       
Query: 241 acaatccagtgttgtctacaatagcaatgaatcaggaagtagtcttggacttagggtatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 acaatccagtgttgtctacaatagcaatgaatcaggaagtagtcttggacttagggtatc 245

                                                       
Query: 301 aagctagccactctacaggatcttccctctagttttatcaccag 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aagctagccactctacaggatcttccctctagttttatcaccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)