BAC Information

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BAC

Clone NameMSMg01-458F04
Chromosome2 (Build37)
Map Location 88,071,936 - 88,072,554
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170
Downstream geneOlfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458F04.T7 (MSMg01no458_f04.b1)MSMg01-458F04.TJ (MSMg01no458_f04.g1)
ACCAG544180AG544181
length741761
length of high quality
(start - end)		625 (53 - 677)567 (79 - 645)
definitionCHROMAT_FILE: MSMg01no458_f04.b1 PHD_FILE: MSMg01no458_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:53 2005CHROMAT_FILE: MSMg01no458_f04.g1 PHD_FILE: MSMg01no458_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:53 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTAAGAAATTCTAAATACACCTTAAAGGGAGATCTGTGC
GCTGACCTGCTGTCATTTCTCCTGTCCTGCTGAATGTTGTCATCCTACTT
TGAGTCCAAGCTATTCTAATCATATTGTTTCATATATTTGCTTAGGGGTA
GATTATAATCTCCACGACCCAGAGAAGACTCCCAAGTAGGATCTACTAAG
GTTACTTCCTTGAGAGCAGGGTGTGGTACATTCAGGACTTTCTCAGGGGA
TACACTAAAAAGAATGTAACACACAGAGACTCAAACTGAAAGTAAAAGGC
ATCATATCAATGATCAATGTATGTGGCTCAACCTTGCTGATACTTTCTCA
AAGAACTGTGTTGGCTTTATGACTTATAACATTCCGCTAGAAAATGGCTG
TGCCAGAAAAACTTGGTTCTAAACAATTATATCACACATACTTATCTCAA
ATAATTGTTCTTTCTGGAAAAGTATACCTGTGAAACAAAAAACATTTCTT
TGCTTTAAATGTGATAAATTTTATGATTGTGCTAACAGATTGTTGCAAGT
AGATGCAGTATATCTTCTATTAAGTGTTTTATATACTTTATACTAATATA
TAAATTTCTTAAAATCAAAAATTTCCCAATCATTTCTACTGTAACAATTT
TGGATGGNAAATGGTTTTTTTATAATTATTATACTAAGTTN

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
AGATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACAGGAGGA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
GATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGAT
AAGTGGATATTAGCCCANAACCTATGATACCCNAGATATAAGATACAATT
TCCTAAACACATGAAACTTCAGAAAATGAGGACTGAAGTGTGAACCCTAT
GCCCCTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_f04.b1 MSMg01no458_f04.b1 CHROMAT_FILE:
MSMg01no458_f04.b1 PHD_FILE: MSMg01no458_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:53 2005
         (625 letters)



>mm_chr2_88071731_88072754
          Length = 1024

 Score = 1137 bits (588), Expect = 0.0
 Identities = 612/620 (98%), Gaps = 1/620 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattctaagaaattctaaatacaccttaaagggagatctgtgcgctgacctgctgtcatt 65
           |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 824 aattctaagaaattctaaatacacctcaaagggagttctgtgcgctgacctgctgtcatt 765

                                                                       
Query: 66  tctcctgtcctgctgaatgttgtcatcctactttgagtccaagctattctaatcatattg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tctcctgtcctgctgaatgttgtcatcctactttgagtccaagctattctaatcatattg 705

                                                                       
Query: 126 tttcatatatttgcttaggggtagattataatctccacgacccagagaagactcccaagt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tttcatatatttgcttaggggtagattataatctccacgacccagagaagactcccaagt 645

                                                                       
Query: 186 aggatctactaaggttacttccttgagagcagggtgtggtacattcaggactttctcagg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aggatctactaaggttacttccttgagagcagggtgtggtacattcaggactttctcagg 585

                                                                       
Query: 246 ggatacactaaaaagaatgtaacacacagagactcaaactgaaagtaaaaggcatcatat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ggatacactaaaaagaatgtaacacacagagactcaaactgaaagtaaaaggcatcatat 525

                                                                       
Query: 306 caatgatcaatgtatgtggctcaaccttgctgatactttctcaaagaactgtgttggctt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 caatgatcaatgtatgtggctcaaccttgctgatactttctcaaagaactgtgttggctt 465

                                                                       
Query: 366 tatgacttataacattccgctagaaaatggctgtgccagaaaaacttggttctaaacaat 425
            |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 catgacttataacatta-gctagaaaatggctgtgccagaaaaacttggttctaaacaat 406

                                                                       
Query: 426 tatatcacacatacttatctcaaataattgttctttctggaaaagtatacctgtgaaaca 485
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 405 tatatcacacatacttatctcaaataattgttctttctggaaaattatacctgtgaaaca 346

                                                                       
Query: 486 aaaaacatttctttgctttaaatgtgataaattttatgattgtgctaacagattgttgca 545
           ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 345 aaaaacatttctttgctttaaatttgataaattttatgattgtgctaagagattgttgca 286

                                                                       
Query: 546 agtagatgcagtatatcttctattaagtgttttatatactttatactaatatataaattt 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 agtagatgcagtatatcttctattaagtgttttatatactttatactaatatataaattt 226

                               
Query: 606 cttaaaatcaaaaatttccc 625
           ||||||||||||||||||||
Sbjct: 225 cttaaaatcaaaaatttccc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1024
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1014
Effective search space:   623610
Effective search space used:   623610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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