BAC Information

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BAC

Clone NameMSMg01-459C24
Chromosome2 (Build37)
Map Location 43,437,303 - 43,437,714
singlet/doubletsinglet
Overlap geneKynu
Upstream geneLrp1b, LOC100041228, LOC100041245
Downstream geneArhgap15, Gtdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459C24.T7 (MSMg01no459_c24.b1)MSMg01-459C24.TJ (MSMg01no459_c24.g1)
ACCAG544841AG544842
length907793
length of high quality
(start - end)
---412 (70 - 481)
definitionCHROMAT_FILE: MSMg01no459_c24.b1 PHD_FILE: MSMg01no459_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:01 2005CHROMAT_FILE: MSMg01no459_c24.g1 PHD_FILE: MSMg01no459_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGCAAAAAAAANNCANNATTTCAAAANANNANNNNNGNNAANNNNNAN
NNNTATCANNANNCANCCNNANANCCNCCNTTGNGTAGCAGACCGACCTA
TCCTCGCCCACCTTTTGTTTTTAGTATTTATGAAAGATTACAGCCTATTA
AATTCATAAAAGCCTGTGTTTAGTTGTTACTAAACTCNGNCCCCCNCCCC
CCCCTNNNCCNNNAAAAAAACGAACCCCCCCANNTTTNNAAAAANNNNNC
AAGGGNAACCCCCCAAAAAAAAAAAATGNCCCCTTAAAAAAAAAAACCAT
TCAAAACCCCCTCAAAAAAAAACAAAANNNAAACCTGGGNAAAAAAAAAA
AACAAAATTCCCCCCCCCGGAAAAAAAAACANNNNNNGGGGGNNNCCCCC
CCAAAAAAAATGAAAAAAACCCCCNNNNNNNNTTTTCCTCCNCNNNNNNA
AAAAAAAAAAGGAAAAAAAAANNNNNGGTTTTNCCCCCCCCCCCCCCCTC
CCCAAAAAAAAAAAAAANAAANNANNCCCCCCCAAAAAAAACACCNCNTT
CCCTCCCCCGCCCCCNTCCCCCCCCCCNAAANNANNCNCCCCCCCCCCCC
CCCCCCCNCCCAACAAACCCAAANNAAACCNNCCCCCCCCCCCNNCCNNA
NCCCAACAAACCCCCCCAAAAAAAAAAAACAACACACCCCCCCCCCCNAT
TANCCTCCCCCNTNNNNNNNNNNNTNACNNNNNNNNNANANAACAAAAAN
NCACTCCCCCCAANNAATCCCCANNNNNCCNNNNNCACACACCCCCCCAC
CCACNNNNNANNNNCCTTACTAAANCCAATAATCAACCCCCCCTCTCAAA
TACCCCTNNTNCCCTCTCCACACCCCAAAACCCCACACCCTAATTATATT
TCTTACG
GCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATGACCAAGTTAAGAGTGCCATCAAAAATAG
GAAATACAGGCTTGTTAAGATAATAATAGGCTGGGTGACACTGATGATCA
TGGATTACTGAGTGGTATGTATTATCTGATCTTAGCACTTAACCTCTTCC
GGTTTCCTCCTGAGGAGTAGACAGTTAAGAGACATATATTTTCAGGCTTG
ACATATATGGATTCTTACTTGAGAAACCTTCTCCCTCCTGTCTCTACGTT
TATTTATGTTATAGTTTTCTAATGGTCAATCCTTCCTCCCGCCCTTCCTG
AGCCCTCATCTTCCATAAGCTCGCCTTCTCTGACAGGCGTTATCTCTTAC
TGGCACTGCATTATGAACACATCTCTTTAAACATTTAAAACTTTTCATTA
ACACATGACAGCTGCATATATTGATGAGTGTGATATTTTTTGAAGCTTTT
TTTATCAAACATTTTCTTCATTTACATTCTCCAATGCTATTCCCTGACAG
TTCCTTATACCCTCCCCTGGAGTGGGTAATTTTCATCTCTGTTCTACACT
TTTTTCTCCCTATTCCTTTCTAGCCCGCCCCCTCTCTGATCTTCTTCTTT
CCATTCTCTTGTCTCTTTTCCCCCTTTCCTTTCCCCCTCTCTTTTCTTTT
CCCTTCCTCCCCCTCCCCCTCCTTTTTTCTTTTCCTTCCCATTCTTTCCT
ACCCCTCCTCTTTTCTTTTCCTCCTCCTCCTTTCCTTTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_c24.g1 MSMg01no459_c24.g1 CHROMAT_FILE:
MSMg01no459_c24.g1 PHD_FILE: MSMg01no459_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:01 2005
         (412 letters)



>mm_chr2_43437103_43437914
          Length = 812

 Score =  766 bits (396), Expect = 0.0
 Identities = 408/412 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaccaagttaagagtgccatcaaaaataggaaatacaggcttgttaagataataatag 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaccaagttaagaatgccatcaaaaataggaaatacaggcttgttaagataataatag 260

                                                                       
Query: 61  gctgggtgacactgatgatcatggattactgagtggtatgtattatctgatcttagcact 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 gctgggtgacactgatgatcatggattactgagtggtatgtattatctgatcttagcatt 320

                                                                       
Query: 121 taacctcttccggtttcctcctgaggagtagacagttaagagacatatattttcaggctt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 taacctcttccggtttcctcctgaggagtagacagttaagagacatatatttccaggctt 380

                                                                       
Query: 181 gacatatatggattcttacttgagaaaccttctccctcctgtctctacgtttatttatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacatatatggattcttacttgagaaaccttctccctcctgtctctacgtttatttatgt 440

                                                                       
Query: 241 tatagttttctaatggtcaatccttcctcccgcccttcctgagccctcatcttccataag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatagttttctaatggtcaatccttcctcccgcccttcctgagccctcatcttccataag 500

                                                                       
Query: 301 ctcgccttctctgacaggcgttatctcttactggcactgcattatgaacacatctcttta 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 ctcgccttctctgacaggcgttatctcttactggcactgtattatgaacacatctcttta 560

                                                               
Query: 361 aacatttaaaacttttcattaacacatgacagctgcatatattgatgagtgt 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacatttaaaacttttcattaacacatgacagctgcatatattgatgagtgt 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)