BAC Information

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BAC

Clone NameMSMg01-459G02
Chromosome2 (Build37)
Map Location 78,452,333 - 78,452,793
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp533, BC003993, LOC667920, OTTMUSG00000016703, LOC383717, LOC100040476
Downstream geneLOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459G02.T7 (MSMg01no459_g02.b1)MSMg01-459G02.TJ (MSMg01no459_g02.g1)
ACCAG544988AG544989
length756786
length of high quality
(start - end)
466 (41 - 506)338 (76 - 413)
definitionCHROMAT_FILE: MSMg01no459_g02.b1 PHD_FILE: MSMg01no459_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:17 2005CHROMAT_FILE: MSMg01no459_g02.g1 PHD_FILE: MSMg01no459_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCGGAA
TTCAGCCTTCTCTCTGTGGAACAAAGATTTGGAGCCTAGAGACAATAATC
TGTTAAATGATTTAAGCACACGAGTATCACTTGAGGGGCCATGCCAAACA
TGTTTAATAAGCCGGCAAATAATATGTATAGCACACTGTGTAGAATATGG
CAGATGACATATAAATTAAACACATGTTATGCAGTTCTTATATATTCTAT
GTACTCTAGTTTAACATTAAACAATGCTAGGGTATTAATTAATAACTCCC
TGTTTGTATAAGCCATTACAATAGTGTCAAGACTTTTTTTTTTTAGGAAA
AAAAAAACCAACTTGAAATCCAGTACAGAAAACTGCAAGCCTAGAAACTC
TCATTCATACAGAATGTATTTCCTAATTAATAAAAGCCTCTTGAAGCCTC
ATCACCTTCTTTTAATATATCAAATGGGCGTATATTGTCATCTCATTAAA
CCTCAGTGTCCTTGGAGGCAGAGGATGGAATTATTCATATCGTTTATACC
GCCTTTACTTCCACCAATTGGTTTCATATCCTTGTCATTATTGCCTACTT
CCCTACCTTTTATGGGCTTTATTAAAATTCCCTGACTACCCTGGTTTGAC
GCTGAATCCTACCATTTTTTTAATTTGGCGCCTAACCCCCGCCCCCCGAG
ATATATCTTCCTCGCCCTTCCGCCCCTATAGCCCCCCTCCCATCGCTTTG
CGCTCC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGTCTAGACCTGTATGCCATATT
TAAATTGGATTATTTAGTTTGTTAATATCTAGTTTCTTGAGTTTTTAAAA
TATATTTTGTATATTAGTCTTCTATCAGATGTGGAGTTGGTAAAAATTCT
TTTCTCATTCTGTAAGCTGCTACTTTGTCCATTTGATGTGTTCTTTGCCT
TATAGAAGCTTTTCAGTTTCATGAGGTTCCATTTATTAATTTCTAATCTT
AGAGCCTGCACTATCTGTGTTCTGTTCAGAGAATTATCTCCTGTGCCGAT
ATGATCAAGGCTATTCCCCATTTTCATCTCAATCAGGTTTAGTATATATG
GTTTTATGTTGTGGGCATCCGCTCTCTTTGTTTTTTTATTTTTTCTTGTC
TGATCATACTTTTTTTCTTTTTTTTACTTTTCATACCTCTCTTCCGATTT
TTTTTATTCGATCGTATTTCATTTTCTTCTTCTTTCTCTAAATCTTCGTG
TCCTTCCTTACTTCTCTTCCTTTTCGTCCATTTTTTATTCCCTTTTTTTT
TGTACTTCCGGTTTTGCTCATTCATCTCTACCTTTCGTTTTTCCTTTTTT
CCCCCTTTCCTTTTACTCTCTTTTTTCTTTTCTCCTTTCTCCTCGTCCCG
ATCTTGTATTTTCAATTTCTCTCTCTTTCCGGTCCGTACCGCCTTTTTCT
TTTTTTTTTTTCCCACTCCTTTTTTTCTCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_g02.b1 MSMg01no459_g02.b1 CHROMAT_FILE:
MSMg01no459_g02.b1 PHD_FILE: MSMg01no459_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:17 2005
         (466 letters)



>mm_chr2_78452126_78452993
          Length = 868

 Score =  853 bits (441), Expect = 0.0
 Identities = 456/461 (98%), Gaps = 2/461 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcagccttctctctgtggaacaaagatttggagcctagagacaataatctgttaaa 67
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gaattcagccctctctctgtggaacaaagatttggagcctagagacaataatctgttaaa 609

                                                                       
Query: 68  tgatttaagcacacgagtatcacttgaggggccatgccaaacatgtttaataagccggca 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tgatttaagcacacgagtatcacttgaggggccatgccaaacatgtttaataagccggca 549

                                                                       
Query: 128 aataatatgtatagcacactgtgtagaatatggcagatgacatataaattaaacacatgt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aataatatgtatagcacactgtgtagaatatggcagatgacatataaattaaacacatgt 489

                                                                       
Query: 188 tatgcagttcttatatattctatgtactctagtttaacattaaacaatgctagggtatta 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tatgcagttcttatatattctatgtactctagtttaacattaaacaatgctagggtatta 429

                                                                       
Query: 248 attaataactccctgtttgtataagccattacaatagtgtcaagac-tttttttttttag 306
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 428 attaataactccctgtttgtataagccattacaatagtgtcaagacttttttttttttag 369

                                                                       
Query: 307 gaaaaaa-aaaaccaacttgaaatccagtacagaaaactgcaagcctagaaactctcatt 365
           ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gaaaaaagaaaaacaacttgaaatccagtacagaaaactgcaagcctagaaactctcatt 309

                                                                       
Query: 366 catacagaatgtatttcctaattaataaaagcctcttgaagcctcatcaccttcttttaa 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 catacagaatgtatttcctaattaataaaagcctcttgaagcctcatcaccttcttttaa 249

                                                    
Query: 426 tatatcaaatgggcgtatattgtcatctcattaaacctcag 466
           ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 248 tatatcaaatgggtgtatattgtcatctcattaaacctcag 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 868
Length adjustment: 10
Effective length of query: 456
Effective length of database: 858
Effective search space:   391248
Effective search space used:   391248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)