Query= MSMg01no459_k18.b1 MSMg01no459_k18.b1 CHROMAT_FILE:
MSMg01no459_k18.b1 PHD_FILE: MSMg01no459_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:41 2005
(431 letters)
>mm_chr2_81521491_81522323
Length = 833
Score = 725 bits (375), Expect = 0.0
Identities = 415/429 (96%), Gaps = 4/429 (0%)
Strand = Plus / Minus
Query: 5 gaattcaccttttccca-aaactagttgaggctgctcactccagtctggacttcttgttt 63
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaattcaccttttagcacaaactagttgaggctgctcactccagtctggacttcttgttt 566
Query: 64 agatgttcttcattaaataaattcctgctt-aactgtgtctctcgacttgattctttctt 122
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 565 agatgttcttcattaaataaattcctgcttaaactgtgtctctcgacttgattcgttctt 506
Query: 123 tctagaaaataagaaccgagagccctgacataatattagcactggccactaatgtgttaa 182
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctagaaaataagaacagagagccctgacataatattagcactggccactaatgtgttaa 446
Query: 183 taaaatgattttatcataccagaaagattatttcgacggtgaattaggaagattcccttc 242
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 taaaatgattttatcataccagaaagattatttcgacagtgaattaggaagattcccttc 386
Query: 243 gagatccccacctctgggtgcttcatgaaaatccacgattagaaccatagggatttgttg 302
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 gagatccccacctctgggtgcttcatgaaaacccacgattagaaccatagggatttgttg 326
Query: 303 tcaggtttgctattgtgtcactgttatcaaacttgcagtcatgggctgtacctcaaaggg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 tcaggtttgctattgtgtcactgttatcaaacttgcagtcatgggctgtacctcattggg 266
Query: 363 ccaaggccaaccatccattcttgagaagctaactaaaacaagaaaattcaaaggaaaaaa 422
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 265 ccaaggccaaacatccattcttgagatgctaactaaaacaagaaaattcaaagg--aaaa 208
Query: 423 aaatagcaa 431
|||||||||
Sbjct: 207 aaatagcaa 199
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 833
Length adjustment: 9
Effective length of query: 422
Effective length of database: 824
Effective search space: 347728
Effective search space used: 347728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no459_k18.g1 MSMg01no459_k18.g1 CHROMAT_FILE:
MSMg01no459_k18.g1 PHD_FILE: MSMg01no459_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:41 2005
(459 letters)
>mm_chr2_81331625_81332481
Length = 857
Score = 818 bits (423), Expect = 0.0
Identities = 450/459 (98%), Gaps = 2/459 (0%)
Strand = Plus / Plus
Query: 1 tcatggcctcctagaccattaagagattgtgactggccacctcatataaaagtagacatc 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tcatggcctcctagaccattaagagattgtgattggccacctcatataaaagtagacatt 260
Query: 61 cagtgtttctgtatcatattaatcttatacacagacagtaagcctctgaatactaaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgtttctgtatcatattaatcttatacacagacagtaagcctctgaatactaaaaaa 320
Query: 121 cacttaaaaacatgtctgaaaaccggtcggattgtcagaggaagtgataaccctgtaaaa 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 cacttaaaaacatgtctgaaaaccagtcggattgtcagaggaagtgataaccctgtaaaa 380
Query: 181 tctttaccagagttattgttctaaagaaatataaaaactaagattctggttgcccttcaa 240
| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttaccagtgtt-ttgttctaaagaaatataaaaactaagattctggttgcccttcaa 439
Query: 241 tgtctatgtcagacagcacagaacatctcactcatttgaatgcaatttttttatttatgt 300
|||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 440 tgtccatgtcagacagcacagaacatctcactaatttgaatgcaatttttt-atttatgt 498
Query: 301 gaatttgcattgagttcttttgtttacaacttgaaagttagttataatcacatgtgaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaatttgcattgagttcttttgtttacaacttgaaagttagttataatcacatgtgaaaa 558
Query: 361 ggatgcctgtcacaaccatgagaatgataaggaataggatgaagagagaagaaaaatgcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggatgcctgtcacaaccatgagaatgataaggaataggatgaagagagaagaaaaatgcc 618
Query: 421 aggttcttgattcagtcattgctgtttgtcatctgaaca 459
|||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aggttcttgattcagtcattgctgtttgtcatctgaaca 657
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 857
Length adjustment: 10
Effective length of query: 449
Effective length of database: 847
Effective search space: 380303
Effective search space used: 380303
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
