Query= MSMg01no460_b19.b1 MSMg01no460_b19.b1 CHROMAT_FILE:
MSMg01no460_b19.b1 PHD_FILE: MSMg01no460_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:16 2005
(517 letters)
>mm_chr2_28613204_28614121
Length = 918
Score = 971 bits (502), Expect = 0.0
Identities = 514/518 (99%), Gaps = 1/518 (0%)
Strand = Plus / Plus
Query: 1 ccagtgtgctgagatcatgggaacagtacaagcagtgaagaaaaaagtcctgtcaaagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagtgtgctgagatcatgggaacagtacaagcagtgaagaaaaaagtcctgtcaaagta 260
Query: 61 gaagaccaagacccacattcgtggtgacatccatgcactcacacaagtgtgcacaccgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagaccaagacccacattcgtggtgacatccatgcactcacacaagtgtgcacaccgtg 320
Query: 121 acaacctccccccgctccttgtggttgcgctgtgaccagctacttcaagttcctgccttg 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaacctccccccgccccttgtggttgcgctgtgaccagctacttcaagttcctgccttg 380
Query: 181 acttccctggtataatggtttgcgacctggaattatgaactaaaaacacaaacc-aaacc 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 acttccctggtataatggtttgcgacctggaattatgaactaaaaacacaaaccaaaacc 440
Query: 240 aaacataaagccaaacctttaagtggattcctattgagccttgagagagatcatggcagg 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacagaaagccaaacctttaagtggattcctattgagccttgagagagatcatggcagg 500
Query: 300 gcaagctgctaccctattaaagctcggaatggatagccaggggcttttgtttgagacaga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaagctgctaccctattaaagctcggaatggatagccaggggcttttgtttgagacaga 560
Query: 360 gtctcccttcataggatggtcttgaacccactgagatccatctgcctctgcctcccatgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtctcccttcataggatggtcttgaacccactgagatccatctgcctctgcctcccatgt 620
Query: 420 gcggggaataaaggtgtgcgccactgtactggctggaaagcccctaatcgagggagatgc 479
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagggaataaaggtgtgcgccactgtactggctggaaagcccctaatcgagggagatgc 680
Query: 480 acagcccttggagtgcagttggtgggttgaggcagggc 517
||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagcccttggagtgcagttggtgggttgaggcagggc 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 918
Length adjustment: 10
Effective length of query: 507
Effective length of database: 908
Effective search space: 460356
Effective search space used: 460356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_b19.g1 MSMg01no460_b19.g1 CHROMAT_FILE:
MSMg01no460_b19.g1 PHD_FILE: MSMg01no460_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:16 2005
(478 letters)
>mm_chr2_28739903_28740779
Length = 877
Score = 917 bits (474), Expect = 0.0
Identities = 477/478 (99%), Gaps = 1/478 (0%)
Strand = Plus / Minus
Query: 1 caataaaggcctcaaattaaagacagcctggtgcgaattccaggagaaaattaaagagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 caataaaggcctcaaattaaagacagcctggtgcgaattccaggagaaaattaaagagac 618
Query: 61 ctcaagcttaagtgacaggtgacttgcttctgtgtcacaactgtcaggggatttagtgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctcaagcttaagtgacaggtgacttgcttctgtgtcacaactgtcaggggatttagtgat 558
Query: 121 aatatggcaatatattacaaagggcttttcttattcccccctttaggtttcaaaatgagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aatatggcaatatattacaaagggcttttcttattcccccctttaggtttcaaaatgagg 498
Query: 181 catcttttcttcccaaccaaaaaaaaattacatatatataatgtgagtgtatatacaagt 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 catcttttcttcccaacc-aaaaaaaattacatatatataatgtgagtgtatatacaagt 439
Query: 241 gaaatgtgtagaaaatgataaaatcaggctcacacagttaaaatgatgaggtcagtttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaaatgtgtagaaaatgataaaatcaggctcacacagttaaaatgatgaggtcagtttta 379
Query: 301 gagaaacgtaagaaaaagttaatgacagaaaacaatgcatttaggaaaaagcatctccta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gagaaacgtaagaaaaagttaatgacagaaaacaatgcatttaggaaaaagcatctccta 319
Query: 361 ccaccacttgcagaaacactgctaagactgcccctcctgagactgaacgaggtaattttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ccaccacttgcagaaacactgctaagactgcccctcctgagactgaacgaggtaattttt 259
Query: 421 ggttgtggggaggacagtctaaatttaaactgaagacagaatggggcagagttcggca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggttgtggggaggacagtctaaatttaaactgaagacagaatggggcagagttcggca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 877
Length adjustment: 10
Effective length of query: 468
Effective length of database: 867
Effective search space: 405756
Effective search space used: 405756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
