Query= MSMg01no460_g01.b1 MSMg01no460_g01.b1 CHROMAT_FILE:
MSMg01no460_g01.b1 PHD_FILE: MSMg01no460_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:36 2005
(240 letters)
>mm_chr2_142692711_142693348
Length = 638
Score = 360 bits (186), Expect = e-104
Identities = 226/242 (93%), Gaps = 6/242 (2%)
Strand = Plus / Minus
Query: 1 gaatattagcatacatggagtgaaatagcttgtggcctgtatatgactagtcacgagaga 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 438 gaatattagcatacatggagtgaaatagcttgtggcctgtacatgactagtcatgagaga 379
Query: 61 cacttaaaggaagttttgtataatatttttatgtgcctgcacttttagtatgacttgtca 120
||||||||||||||||||||| ||||||||||||| ||||| ||||||||| ||||||||
Sbjct: 378 cacttaaaggaagttttgtatgatatttttatgtgtctgcatttttagtattacttgtca 319
Query: 121 catgaggtcacatataaaatcaccatttatggtttcatgttaggcttcttgta--ttttt 178
|||||||||||||||||||||||||||||||||||||||| ||||||| || | |||
Sbjct: 318 catgaggtcacatataaaatcaccatttatggtttcatgtcaggcttcctgaagcttt-- 261
Query: 179 ttctaatttggagcatttttagattttagattttcagattaggaatatattacctgtgtt 238
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 260 --ctaatttggagcatttttggattttagattttcagattaggaatatattacctgtgtt 203
Query: 239 tt 240
||
Sbjct: 202 tt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 638
Length adjustment: 9
Effective length of query: 231
Effective length of database: 629
Effective search space: 145299
Effective search space used: 145299
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no460_g01.g1 MSMg01no460_g01.g1 CHROMAT_FILE:
MSMg01no460_g01.g1 PHD_FILE: MSMg01no460_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:36 2005
(518 letters)
>mm_chr2_142501607_142502523
Length = 917
Score = 930 bits (481), Expect = 0.0
Identities = 508/517 (98%), Gaps = 1/517 (0%)
Strand = Plus / Plus
Query: 2 aggaaagctattcttttactttctggtcggagccccttagaagagtatgtgccacacagg 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aggaaagccattcttttactttctggtcggagccccttagaagagtatgtgccacacagg 261
Query: 62 aggcatcttaaataccaactggaatatcgagcaccaagatagacttgtctttaataccct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aggcatcttaaataccaactggaatatcgagcaccaagatagacttgtctttaataccct 321
Query: 122 ccagctctttagtgactttaaaatggaatatatgttttaaaattttctccaggaaaaaaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccagctctttagtgactttaaaatggaatatatgttttaaaattttctccaggaaaaaaa 381
Query: 182 aggcctttaaaaagatcaaataaaactagaatgaaggaacctgggcactgaagctagggt 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 -ggcctttaaaaagatcaaataaaactagaatgaaggaacctgggcactgaagctagggt 440
Query: 242 cctctggcctatactcttcctctgtggctttcacagcttaacacctaaccactgtttgat 301
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctctagcctatactcttcttctgtggctttcacagcttaacacctaaccactgtttgat 500
Query: 302 atctctggtgagagaaatggcacaccacatccacatcacaactttgggtaagactcctcc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctctggtgagagaaatggcacaccacatccacatcacaactttgggtaagactcctcc 560
Query: 362 ttctcatggcagccctggtatggtgccttgctaaaggattccaactcctttaactgcgta 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctcatggcagccctggtatggtgccttgctaaaggattccaactcctttaactgcgta 620
Query: 422 ctataaactctatgacaggcacagtgccaatgggcattaaacgttgagagggcaagggga 481
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 621 ctataaactctatgacaggcacagtgccaatgggcattggacgttgagatggcaagggga 680
Query: 482 agctgtgagaccattcctaaggttgcaccccaatgta 518
|||||||||||||||||||||| ||| ||||||||||
Sbjct: 681 agctgtgagaccattcctaaggctgcgccccaatgta 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 917
Length adjustment: 10
Effective length of query: 508
Effective length of database: 907
Effective search space: 460756
Effective search space used: 460756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
