BAC Information

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BAC

Clone NameMSMg01-461E05
Chromosome2 (Build37)
Map Location 158,386,809 - 158,387,044
singlet/doubletsinglet
Overlap genenone
Upstream geneBlcap, Nnat, Ctnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481
Downstream geneSlc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461E05.T7 (MSMg01no461_e05.b1)MSMg01-461E05.TJ (MSMg01no461_e05.g1)
ACCAG546427AG546428
length756788
length of high quality
(start - end)
42 (75 - 116)236 (77 - 312)
definitionCHROMAT_FILE: MSMg01no461_e05.b1 PHD_FILE: MSMg01no461_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:48 2005CHROMAT_FILE: MSMg01no461_e05.g1 PHD_FILE: MSMg01no461_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTCATATTTGCGGCGCTAGACGACTCACTATATGCAGAAAAGGGGCGG
AATTCCCACATCTTACTTTAAGCTAGGCTAACTCTAAATTTTTTCACTTT
AGAGCCGAGCAATGGTGTCACACGCCTTTAGTCCCAGCACTTGGGAGGCA
GAGACAGGCATATTTCTGAGTTCGAGGTCAGCCTACAACTGAATGAGTTT
CAGGACAGCCAGGGCTACACTGAGAAACCCTGCCTTGAATAAAAAAATTT
TTTAATTAAAAAAATTTTTTCACTTTACAAGAGAGTGCTTTTTCTACTTG
CAAAAGAATTTTGCCTTTGTGTTTCTCTACCTAGAGCATATATTCATTAC
AAAAACAAATTACCTATCCTAAGCAAAAAACCTATCAACTAATCACCGGG
AATATGCCCGGTGTCCTGCCCCCGACGCGAGGCTATGCTTATATCTTGCA
TACAACGAAGCCCTTTATGGTCCCTGCTGTTGTCTTTTTTACCCTTCCTG
CCTCCTTTATACCTCCTTATTCCCCCTTTCGCTGATTCTTCCTTACTCCC
CCACCTTGTATCCTTTTTCTCTGATGTCCCCTCTTCTCCCTTTCCCTGTC
AGAGCCCTTTCTGGTTCCCTCCCCACCCCTTTGTTTTTTGCCCCCCTGGC
TTTGTTTCCCGTTTTACCCCTTTCAATCTTCTTCCCCTCCGCTATCCTTA
CTTCTATTCTCTTGTACCTCTCTCCCTTTTCTGTTTTTTTTACCCCCCTT
TCCCCG
GACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAAACCTGGACTGGAAGGGGAGC
TGTGAGGAGGCCCGGTCTGCTGACAGGCTGTTGAAGGGCCAGCCAGGGCT
GGAAACAAGATAGGCAGAATGAGGCCATCTCCTGGGGCTGCAGAGAGGCT
TGTGTGCAGCGCTGGCCTCGCTCCTGCAAAGGTCCTCCAGGCCCGAGTAT
TAGCAGGGCTGGGGTGAGAGACAGGTCATACTGGAGAAGACGGGACGGGG
ACCGCTTGAAGCTGTTTTTTTCTTGCATTGTGGGAAGAGCAAGAACTGAC
AGACCTCATTGGTCTGGACAACTGGAAGCAGCCTGTCTGAGGGACCTGGT
GATTGGATAGCGGGCGTCACCTATTCTCATGCCTCTCTCCTTCCCTTCCT
CTCTTTTCCCCTTCCTTCTCTTCTCCCTCCTCCTCTTTTTTTTTTTTCCC
TTCCCTCTCCTCTCTCTTCTCTCTTTTTCTTTTTCCTTTTCTCCTCCCTG
CCTTTTCCCTTTTTCCCTTTTCCATCTCTTTTTCCTTCCCTCCCCTTTTC
CCCTTTTTTATTTCCCCCCTCCTTTCCCTCCCTTTTTCTCTTTCTCTTTC
CTCTTTATTTTCCCATCCTTTCCTTTCTCCCTTCCTTTTCCTATCCCCCA
TCTTTTCCCCTCTTTACCCCTACCTTGTTACTTCTACCCCCCCTTTTTTC
TTCCCCTTTACCCCCTTTCTTCCCTCTCTTCCTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_e05.g1 MSMg01no461_e05.g1 CHROMAT_FILE:
MSMg01no461_e05.g1 PHD_FILE: MSMg01no461_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:48 2005
         (236 letters)



>mm_chr2_158386609_158387244
          Length = 636

 Score =  426 bits (220), Expect = e-124
 Identities = 232/236 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaacctggactggaaggggagctgtgaggaggcccggtctgctgacaggctgttgaag 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 436 acaaacctggactggaaggggagctgtgaggaggcccgggctgctgacaggctgttgaag 377

                                                                       
Query: 61  ggccagccagggctggaaacaagataggcagaatgaggccatctcctggggctgcagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggccagccagggctggaaacaagataggcagaatgaggccatctcctggggctgcagaga 317

                                                                       
Query: 121 ggcttgtgtgcagcgctggcctcgctcctgcaaaggtcctccaggcccgagtattagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||
Sbjct: 316 ggcttgtgtgcagcgctggcctcgctcctgcaaaggtcctccaggcccgaggaagagcag 257

                                                                   
Query: 181 ggctggggtgagagacaggtcatactggagaagacgggacggggaccgcttgaagc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ggctggggtgagagacaggtcatactggagaagacgggacggggaccgcttgaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)