Query= MSMg01no461_g06.b1 MSMg01no461_g06.b1 CHROMAT_FILE:
MSMg01no461_g06.b1 PHD_FILE: MSMg01no461_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:58 2005
(238 letters)
>mm_chr2_174566420_174567057
Length = 638
Score = 443 bits (229), Expect = e-129
Identities = 235/237 (99%)
Strand = Plus / Plus
Query: 1 aaaacgttattaaatgacatatttattccaaacaaacactgagctggagggaggccttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacgttattaaatgacatatttattccaaacaaacactgagctggagggaggccttcc 260
Query: 61 attatatatgtaccaactagaatgtgagattaaaattcccccaaagctggaggcttctct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 attatatatgtaccaactagaatgtgagattaaaattcccccaaagctggaggcctctct 320
Query: 121 gcgttcttcctcttgcctcctctcccctctggcttctttcttccttaaaaacaaactgtt 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttcttcctcttgcctcctctcccctctggcttctttcttccttaaaaacaaactgtt 380
Query: 181 gacatattaatgctcatagagagtatgccactatggctcctttaaagagtgttatta 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacatattaatgctcatagagagtatgccactatggctcctttaaagagtgttatta 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space: 144041
Effective search space used: 144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no461_g06.g1 MSMg01no461_g06.g1 CHROMAT_FILE:
MSMg01no461_g06.g1 PHD_FILE: MSMg01no461_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:58 2005
(242 letters)
>mm_chr2_174764828_174765464
Length = 637
Score = 329 bits (170), Expect = 1e-94
Identities = 232/276 (84%), Gaps = 39/276 (14%)
Strand = Plus / Minus
Query: 1 ctct-gggaagatgggaataaacattggtgcagaagaaatcatctcaccttgatgtctat 59
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 538 ctctggggaagatgggaataaacattggtgcagaagaaatcatctgaccttgatgtctat 479
Query: 60 gtgtcctg---------------------------------atatcacaactatataagg 86
|||||||| ||||||||||||||||| |
Sbjct: 478 gtgtcctgatatcctgatgtcctgatatatatagtagttatatatcacaactatataaag 419
Query: 87 taggagaagttttttttttttttccagagagggttgctgaaagccaacatagggacccta 146
||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 418 taggagaag----ttatttttttccagagagggttg-tgaaagccaacatagggacccta 364
Query: 147 tgtgcagcatcccctataatcaagcctcatctgcctcctgaaagccatgacactagcaaa 206
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 363 tgtgcagcatcccctataatcaagcctcaacagcctcctgaaagccatgacactagcaaa 304
Query: 207 caagcttcatttacttaaagcaagagggacaaaact 242
||||||||||||||||||||||||||||||||||||
Sbjct: 303 caagcttcatttacttaaagcaagagggacaaaact 268
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 637
Length adjustment: 9
Effective length of query: 233
Effective length of database: 628
Effective search space: 146324
Effective search space used: 146324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
