BAC Information

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BAC

Clone NameMSMg01-461G11
Chromosome2 (Build37)
Map Location 151,912,825 - 151,913,063
singlet/doubletsinglet
Overlap geneScrt2
Upstream geneLOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik
Downstream geneSrxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461G11.T7 (MSMg01no461_g11.b1)MSMg01-461G11.TJ (MSMg01no461_g11.g1)
ACCAG546535AG546536
length717728
length of high quality
(start - end)
228 (88 - 315)242 (74 - 315)
definitionCHROMAT_FILE: MSMg01no461_g11.b1 PHD_FILE: MSMg01no461_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:59 2005CHROMAT_FILE: MSMg01no461_g11.g1 PHD_FILE: MSMg01no461_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATACGAGG
CGGCGGNAATCAAGGTCTGCCTAAAATATTTGNTTGGTTGTTTTTGTTGT
TTTCTTGAGACAGGTTTCCAACTCACTCAGTAGACCAGGCTGGCCTTGAA
CTCAAAAATCCTACTGCCTCTGCCTACCGAGTGCTGGGATTCAAGGCATG
CACCACCACTGCCCAGCTAAGGTCAATCCTTTTTACTTACAAAGAAGTTA
TCTCATAATAAAAAATGGGGCTGGTGGCACATGCCTGTAGTAACAAATCC
TGGTCCTTGGGAGGGATTTTTTTTATGATCAGAAGTTTAATCACGTCCTA
GTATATAAAAATCTGTCTCAAAATACATCTTCCCCCCATGAAAATGGAGC
TGGAGAGATGACTTAGAGGACCCACCTTCAGTTTCCAGCACCCACATGGT
GGCTTACAACCATCTGTAAACGTTAGTTCTAGGGGACCCGACCCCATCTC
CTGATCTCCAAGGACACCTAGGCTCAACATGCTCGTCATATATATCAGGT
TAACAAATTTTATTATACCTATTTATGGGCTGCCCTGATAGTTTCATAAG
GTATAGTGTTTGTACTCCACTTCTTTGTTCCCCTTATAATTCTTTTATTT
AACCCCTCCCCTCAATTGCGGCTTTATGCTTCACTCCCTCTTTAAATATT
TGTGTTCCACTTTTCCN
CGCCGCCGATGACTAGGGTAGCCTGGNNGGCGCCTGTTTCACCAATTTAG
GTGACCTATAGATTGTCAGCGAAATTCTCTAGAAGCCCCTTGGGTCAGTA
GGCATCAGCCGCAGGCTCTACAGCCCGGTTGTGTTAAGCCAGACCCCTCA
CTCTGCCCCCTGCACCTCTGTGGGCAGATGTTCAGAGGTACCAGCTGCCA
GGCCTTTGGAGAAGGTGGGTGTCATTCTGGTCCAGTGCCCAGGGAACAGC
TAACAAAGATGCTATAATAGGGGGAGGGGGAGGTACCCAGCCCCTTTGCC
CAGCTCTGTGAGTTTTCTGTTTAAACTATTTTTATCCTGCTTTGCTGCTG
ACAGACCTGTCTTTCTGCTCTGCTGGCTGACGCTGATTCTTGACGCCTGA
TGTTCTGGCTCTGCATCACCCATCTCTTATTATACCTACGCTTCATCTCT
ATGGTCCCCTCTGCAGTTGTTCGAGCCCTCCTCTCGTTCTCTATGTTCCT
CTTTTTTCTGCCTCCCCCTATAACTTTCAGTATTATCTTTTCTCTTTACT
GCCTCTTGGGTGTTATTTCTCTCCCCTTTGATTTCTTTTGCCTTTTCTTC
CCTGTTTTCTCCCTTCTTTTTTCGTCTCTCCCTTCTTTTCCTCCTTCTTA
TTTTTTTTTCTCCTCGCCTTACCTTCCTCTAACCTTTTTTTTTTTCCTAT
CCCCCCTTTGTCCCCTCTTTTTTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_g11.g1 MSMg01no461_g11.g1 CHROMAT_FILE:
MSMg01no461_g11.g1 PHD_FILE: MSMg01no461_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:59 2005
         (242 letters)



>mm_chr2_151912625_151913266
          Length = 642

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctctagaagccccttgggtcagtaggcatcagccgcaggctctacagcccggttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctctagaagccccttgggtcagtaggcatcagccgcaggctctacagcccggttgtg 260

                                                                       
Query: 61  ttaagccagacccctcactctgccccctgcacctctgtgggcagatgttcagaggtacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaagccagacccctcactctgccccctgcacctctgtgggcagatgttcagaggtacca 320

                                                                       
Query: 121 gctgccaggcctttggagaaggtgggtgtcattctggtccagtgcccagggaacagctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgccaggcctttggagaaggtgggtgtcattctggtccagtgcccagggaacagctaa 380

                                                                      
Query: 181 caaagatgctataatagggggagggggaggtacccagcccctttgcccagctctgtgag 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagatgctataatagggggagggggaggtacccagcccctttgcccagctctgtgag 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)