Query= MSMg01no461_h13.b1 MSMg01no461_h13.b1 CHROMAT_FILE:
MSMg01no461_h13.b1 PHD_FILE: MSMg01no461_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:05 2005
(240 letters)
>mm_chr2_67620931_67621573
Length = 643
Score = 360 bits (186), Expect = e-104
Identities = 228/244 (93%), Gaps = 5/244 (2%)
Strand = Plus / Plus
Query: 1 cccctttgtttccctagacagtttaactctacttatatcatgggtacatacatgatttta 60
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 cccctttgtttccatagacagtttaactctacttatatcatgggtacatacacgatttta 260
Query: 61 tgtattatatggacatgtgttgttgaaaagggttttgt----cttaaaatagcaaaagta 116
|||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||
Sbjct: 261 tgtattatatggacatgtgttgatgaaaagagttttgtttgtcttaacatagcaaaagta 320
Query: 117 ttaacaaaagcatccaaccccagtcaacacactcttcgccttgaatatgtctttgttttt 176
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 321 ttaacaaaagcatccaaccccagt-aacacactctttgccttgaatatctctttgtttgg 379
Query: 177 tttgcctttttctttatactgtggatgcttaaataaagcaactcttctgttatacattaa 236
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 380 gttgcctttttctttatactgtggatgcttaaagaaagcaactcttctgttatacattaa 439
Query: 237 aatg 240
||||
Sbjct: 440 aatg 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 643
Length adjustment: 9
Effective length of query: 231
Effective length of database: 634
Effective search space: 146454
Effective search space used: 146454
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no461_h13.g1 MSMg01no461_h13.g1 CHROMAT_FILE:
MSMg01no461_h13.g1 PHD_FILE: MSMg01no461_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:05 2005
(537 letters)
>mm_chr2_67784945_67785881
Length = 937
Score = 876 bits (453), Expect = 0.0
Identities = 516/537 (96%)
Strand = Plus / Minus
Query: 1 atctttaggttttttgatattaatttttggtactaagaaggaaagactttggagaccctg 60
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 atctttacgtttttttatattaatttttggtactaagaaggaaagactttggagaccctg 678
Query: 61 tagtcatatctgagttcactctcatggtgaaaacagagtggttgccccaggaccataggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tagtcatatctgagttcactctcatggtgaaaacagagtggttgccccaggaccataggc 618
Query: 121 tgttccttttcatgtcagcagaaggcaagtatactagaggcaacagctgtcatggggaca 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 617 tgttccttttcatgtcagcagaaggccagtatactagaggcaacagctgtcatggggaca 558
Query: 181 ttcatcagtgcacagcgaggtccctttccattaccccaaagattaatgctacccactggt 240
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 557 ctcatcagtgcacagtgaggtccctttccaataccccaaagattaatgctacccactgat 498
Query: 241 taactgaaataaagattacaccaagtacccatgaagggaagtcagccctgaatctatcag 300
|| |||||||||| |||||||||||| ||| ||||||||||||||||||| ||| ||||
Sbjct: 497 tagctgaaataaatcttacaccaagtatccacgaagggaagtcagccctgactctctcag 438
Query: 301 aggaagcagaactggaaaaaggagagggggaaggtaaaaaacagaggaaagaggagaggg 360
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 437 aggaagcagaagtggaaaaaggagagggggaaggtaaaaaacagagaaaagaggagaggg 378
Query: 361 ggcaggacaatggaggaaacaggaaagtaagttgtaactacttataagaactcatgtgta 420
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 377 gggaggacaatggaggaaacaggaaagtgagttgtaactacttataagaactcatgtgta 318
Query: 421 actaccaaaaacattagaattaaaatataattctcagtgaaaataaacacttcccttact 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 317 actaccaaaaacattagaattaaaatataattctcagcgaaaataaacacttcccttact 258
Query: 481 tatctaatagtataaaacactaacttaaagaaccagaacgctgatactttccgctgc 537
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 257 tatctaatagtataaaacactaacttaaagaactagaatgctgatactttccgctgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
