BAC Information

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BAC

Clone NameMSMg01-461H14
Chromosome2 (Build37)
Map Location 104,953,684 - 105,133,270
singlet/doubletdoublet
Overlap geneWt1, 0610012H03Rik
Upstream geneCd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356
Downstream geneRcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461H14.T7 (MSMg01no461_h14.b1)MSMg01-461H14.TJ (MSMg01no461_h14.g1)
ACCAG546588AG546589
length726726
length of high quality
(start - end)		408 (71 - 478)242 (74 - 315)
definitionCHROMAT_FILE: MSMg01no461_h14.b1 PHD_FILE: MSMg01no461_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:05 2005CHROMAT_FILE: MSMg01no461_h14.g1 PHD_FILE: MSMg01no461_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,953,684 - 104,954,092)(105,133,041 - 105,133,270)
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGAAGAGCGCGGAA
TTCCTGGCTTTGCTGTAAGTGACGATTTTCTGTAATGCTTCTTTTTTAAC
ATCAATTTATTATTATTGTTGTTGTTGTTGTTGTTAAATGCATTTTTGGA
GGTCAGAGGACAACTTTGCAGAGTTAATTCTCTCTTCTACCGTGAAACAC
GGGTTATTATGTTTGCGCACCATGTGCCTTTGCCTACTCTGAGCCATCTC
AATGGTCCTCTTCTTCTTGCAGGAGGAGAATGTGCCACAATTATGACCAA
ATCCTATAGCATATTTTTTATCTAAAAGCCACTATTATCCGCTCTCAGTT
TGGGTCTTGGGCTTGTAAAAGTTACTGGGCAAGGGAAAGTGAATGCTCTC
TACAACACAAAGAGGGTTCTCCCTTCACACAGGCCTAGCTTGGACAACCC
ATAGAACCTCTTTGCTGAGAAAGAAGGGTGAGACTGGGAGCTCTCATAAG
TCTTTTGAATTTTGTAACACTGCAAACAAGACTCAAGTTAGGAAAACGTG
GGTTTCCATATCTGATCCAACTGGGTGGTACTCATGGAGGAGCCAGGTTG
AGATGGGAATAGGTGAATGGGAGCTTAGCATAACTGATATTCCCTTCCTA
CCCCAGAAAAGTTATAACTCGTCGGGGTTTCCTTTTAATACTATAATGCC
TATTTCTTCCAGGGTTTATCTTTTTC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGATTGATAGCTGTGGGAACATAGAAA
CGAATAGTTCTTAAAAAGCAATCAGATAGGACTGTAAGATCAAGTCACAA
GGAACCATGGCATAAGGCACTGACAACCAGTAATGACACTGGCCTCACAG
GTATTCACACGCTACAGATAATTTTAAGGTCATTCTGAGCCCTTTGAGAA
TGTGCCTTTAAGCCACTTAGCCACACAGGAAGTTGTCACCGATGGGCACT
TTGCTGAAGTCTATTTGTATGGGGGACGAGGGGAGGCAGATCTTGTCTTA
CAGAGACATTCTTGGGCAGCCGTGAAGATATTAGCTATTTTACCCAATTT
CTTCCAAGCTGAAACATAATAGAACATTACAAATCTGTTTTGATGTTACT
TAATCTAATGAAAAAAAATGTTCATCTCTTTGATAAGTGCTCATTAGCCA
TTTTTTTCTGACATAAACAGACAAGAAAGATGTTCCCTGGCTGCATTTAA
AACCCAGCTCAGCTAATTACAGTTGCATGACTCACAGAATATAGTCAGCA
CGCTGAAGTTTCGCACTTGAATTGTCTTTATAGTTGCAATAAATATCCTA
CCCAACAATTATAAGGTCCCCACCAAAGTGAAATTTGCTTCTCATATGCA
TCCCGTTTTATACCACTAGAGCGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_h14.b1 MSMg01no461_h14.b1 CHROMAT_FILE:
MSMg01no461_h14.b1 PHD_FILE: MSMg01no461_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:05 2005
         (408 letters)



>mm_chr2_104953485_104954292
          Length = 808

 Score =  714 bits (369), Expect = 0.0
 Identities = 399/409 (97%), Gaps = 1/409 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacgattttctgtaatgcttc-ttttttaacatcaatttattattattgttgttgttgtt 59
           ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 200 gacgattttctgtaatgcttctttttttaacatcaatttattattattattgttgttgtt 259

                                                                       
Query: 60  gttgttaaatgcatttttggaggtcagaggacaactttgcagagttaattctctcttcta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gttgttaaatgcatttttggaggtcagaggacaactttgcagagttaattctctcttcta 319

                                                                       
Query: 120 ccgtgaaacacgggttattatgtttgcgcaccatgtgcctttgcctactctgagccatct 179
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 320 ccgtgaaacacgggttatcatgtttgtgcaccatgtgcctttgcctactctgagccatct 379

                                                                       
Query: 180 caatggtcctcttcttcttgcaggaggagaatgtgccacaattatgaccaaatcctatag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caatggtcctcttcttcttgcaggaggagaatgtgccacaattatgaccaaatcctatag 439

                                                                       
Query: 240 catattttttatctaaaagccactattatccgctctcagtttgggtcttgggcttgtaaa 299
           ||||  |  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cataactcgtatctaaaagccactattatccgctctcagtttgggtcttgggcttgtaaa 499

                                                                       
Query: 300 agttactgggcaagggaaagtgaatgctctctacaacacaaagagggttctcccttcaca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agttactgggcaagggaaagtgaatgctctctacaacacaaagagggttctcccttcaca 559

                                                            
Query: 360 caggcctagcttggacaacccatagaacctctttgctgagaaagaaggg 408
           ||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 560 caggcctggcttggacaacccatagaacctccttgctgagaaagaaggg 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no461_h14.g1 MSMg01no461_h14.g1 CHROMAT_FILE:
MSMg01no461_h14.g1 PHD_FILE: MSMg01no461_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:05 2005
         (242 letters)



>mm_chr2_105132855_105133496
          Length = 642

 Score =  398 bits (206), Expect = e-115
 Identities = 227/240 (94%), Gaps = 10/240 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgattgatagctgtgggaacatagaaacgaatagttcttaaaaagcaatcagataggact 60
           |||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 416 tgattggtagctgtgggaacatggaaaggaatagttcttaaaaagcaatcagataggact 357

                                                                       
Query: 61  gtaagatcaagtcacaaggaaccatggcataaggcactgacaaccagtaatgacactggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gtaagatcaagtcacaaggaaccatggcataaggcactgacaaccagtaatgacactggc 297

                                                                       
Query: 121 ctcacaggtattcacacgctacagataattttaaggtcattctgagccctttgagaatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ctcacaggtattcacacgctacagataattttaaggtcattctgagccctttgagaatgt 237

                                                                       
Query: 181 gcctttaagccacttagccacacaggaagttgtcaccgatgggcactttgctgaagtcta 240
           |||||||||||||||||||||||||||||||||          |||||||||||||||||
Sbjct: 236 gcctttaagccacttagccacacaggaagttgt----------cactttgctgaagtcta 187


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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