BAC Information

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BAC

Clone NameMSMg01-461I03
Chromosome2 (Build37)
Map Location 116,910,947 - 116,911,181
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433464, Tmco5, LOC100043557, LOC241621
Downstream geneSpred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461I03.T7 (MSMg01no461_i03.b1)MSMg01-461I03.TJ (MSMg01no461_i03.g1)
ACCAG546614AG546615
length776787
length of high quality
(start - end)
74 (203 - 276)238 (75 - 312)
definitionCHROMAT_FILE: MSMg01no461_i03.b1 PHD_FILE: MSMg01no461_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:08 2005CHROMAT_FILE: MSMg01no461_i03.g1 PHD_FILE: MSMg01no461_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAATCTATCTTTGCGGTCGTTATTTGACTCACTATATTCCAAAATCCGCG
GAATTCATTATTATTTCTCTTTCAAGACAGACATTTGAGGAGTGCATAAG
GCATTAGTGTGTATTTGTGAACAGGAGGCTTTTATACCAATAAAGAGGAT
GTACCTATTGTTTGGTTTGGTTTGTGCGACTGTATTTGCTACCAAAGGAT
GTTTTTGGTAAACTAGTGACTTACCTTCTCTTATAAAAATCCCATATGAG
TCCCTCCCTGCCCCAGTGCCTTCTGGGATGTGTAACAGTTCGTCATGTTT
ATAACTCCTAGGGACTGCTTTTTTTCCTGCCTTCCAGCCTCTATGCTGAT
CTCCCCTCCCCTCTTGATCAGATGACTGGCATTTACTCCCTCGTCCTCAG
TCCACTCTTGTTGCCACTGTCTTTCTTAAGGATCTCCTTTATGTTCCTTA
CCGCTAACCCTTGATGTCCACCTTCCGTTCCCCTTGTTATCGCTTCTTCC
TCGTTTCTGTTTCATTCTTCTTCTTTCCCTCTTTCTTTCCCTCGCCCTTC
CCGCTTTTTCTCCTTTTTTCTCTTTTCTCCCCCTTCCTCCTTATCCTCCT
TTTACATTCCCTTTTTACTTTCCTTCTCCTCTGCTTTTTTCTTATCCCCC
CTGTTTCATTTATTTCCCCTTTTTACCAATCTTCTTTCCTTTCACCACTC
CCTTCTCACTTAGCTTCTTATCTTTTCTTCAGCTCCTCTTGTCTTTCCTC
TCTTTCTTTTACCCCCCTTTTCCCAA
CCCGATGATAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTGCCTCTGGCTTTTGCTTTGGTCT
GGCTAGTGGGCAGGGCTGGCAAGAAGTCAGAGAGCAGAAGGAAAAAGAGA
TGGATAAAGTATTTTCACTGCCCTTCCCTCCAGGTCTTAGCTTGTCAGTG
GCTCCTATTGGGGTCCCTTCCCATAGTGCAGGCTGCAGTAGGACTCAGCT
CTCACTCCCTTCCCTTGTGCTTTGGATTTCCCGTTGCCATTGCTGGTTAC
TTTTACTTTCCTTTTTATTATTTATTTTCTTCAATTACATTTCCAATGCT
ATCCCAAAATTTCCCTTCGCATATCCCCCCCACTCCCCTACCCACCCATT
TTCATTTCTTGGTCCTGGCGCTCTCCTGTATTGGGTCTTATACAGTTTGC
TTGTTTATGTCCCTCTTTTTTCCTCTGCATGTTCGATTATTTCCTCCCTC
TCATCTCTTTGCCTCTTATTCGTTATGATCCTCGCCCCTCCTTCCCCTTT
ACCCTTTTTCTTTTAGTCTTTCCTTTTCTTCCCACCATTTTTGCTTTCTG
TCCTTTCCCGTCCTCTTTCCCTTGTTTTTTCCTTTTCTCTTCGCATTCTT
TTTTTTCTTCACTTCCCTTCTTATATCCCCCGTTTTTTTCTTCTCCTTTT
ATCACTTCCTTTCTTCCTCTCCTCACCTCCCTTTATTTTTTTAATACCTT
TCACCCCCTTTTCTTCCGCCTCTCTATTCTTCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_i03.g1 MSMg01no461_i03.g1 CHROMAT_FILE:
MSMg01no461_i03.g1 PHD_FILE: MSMg01no461_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:08 2005
         (238 letters)



>mm_chr2_116910618_116911255
          Length = 638

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgcctctggcttttgctttggtctggctagtgggcagggctggcaagaagtcagagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttgcctctggcttttgctttggtctggctagtgggcagggctggcaagaagtcagagag 505

                                                                       
Query: 61  cagaaggaaaaagagatggataaagtattttcactgcccttccctccaggtcttagcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagaaggaaaaagagatggataaagtattttcactgcccttccctccaggtcttagcttg 445

                                                                       
Query: 121 tcagtggctcctattggggtcccttcccatagtgcaggctgcagtaggactcagctctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcagtggctcctattggggtcccttcccatagtgcaggctgcagtaggactcagctctca 385

                                                                  
Query: 181 ctcccttcccttgtgctttggatttcccgttgccattgctggttacttttacttt 235
           ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 384 ctcccttcccttgtgctttggatttccggttgccatcgctggttacttttacttt 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)