BAC Information

Click to search

BAC

Clone NameMSMg01-462P13
Chromosome2 (Build37)
Map Location 40,700,939 - 40,701,249
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462P13.T7 (MSMg01no462_p13.b1)MSMg01-462P13.TJ (MSMg01no462_p13.g1)
ACCAG547733AG547734
length743729
length of high quality
(start - end)
311 (331 - 641)328 (329 - 656)
definitionCHROMAT_FILE: MSMg01no462_p13.b1 PHD_FILE: MSMg01no462_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:10 2005CHROMAT_FILE: MSMg01no462_p13.g1 PHD_FILE: MSMg01no462_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATCAAAATTTGCGGCCGCTAAAAGAANNACGACATTCCTTACTTGCG
NGGNANNCNANNCCATTACGNAAACCCCGGAAANAGGNCAANNAGNAAAA
CNNCCAACAAAGGCAAATCCTTCTCATCTGCACGTCCACTTAGCAACCAG
CTCAAAAGTCGAGGAAAAGCTACTATAATAAATAAATAAAATCTCATGAT
CAAAAATGCCTTCTCTTTTCAGCATTTGCTTTGGCAAGACACCATCTTTC
TATTATATCATGAGTTCAAGGAAGCAGTTAATGAAAAATGGGATCAAAAT
CTGAATTTATGTCCTTTGTTTTGTTATAACGAACTTTGGNTCTCAATGGT
ACTTTCTGGTACTAAATTTGGCTTTTATTATGGAATCAGGATGTTTGCTT
ATGCCTTGTCATTGCTGACCTTCCTTTCTGGATACTTTAGTCATCTTATT
TTACTAACAAGCATCTGGCAAAAGACAAAAACCCTCAAATCCTGTGAAAG
GAATTTCCAAGCAAGATTTACAAGTTTTTGCGGACTCAGGAGATAGTTTG
GAAATATCAAGGTATGTAAAAATATTACATAGTAGGCTTTGGAAATAAGT
TGGTTTTATCTATCTACCTATCATCCATCCATCTATCTATCTATCTATTT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATCTATCTATCCATCGACACTCTGCTACTGACTGGGAATAG
NNCCTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTAGCTCAGTACCCCA
TTTTAAATAGGGTTATTTGGTTATCTGGAGTCTAACTTCTTGAGTTCTTT
GTATATATTGGATATTAGCTCTAGAAGTGCTAATTGGAAACTCATAGTTC
TGAGTACCTCAAAAAAGAAACAACAAAGAACATACACTGCAGCTTGACAG
CACAACTGAAAGCTTTAGAACAAAAAGAAGTAAATAGACCCAAGAGGATT
AAAAGTCAGGAAATAATCAATCTCTTTTCTGAAATCAACCAAGTAGAAAC
AACTAAACCAGGAGCTAGTTCTTTGAGAAAATCAACAAGATAGATAAACC
CTTAGGCAAACTAAGCAGAGGGCACAGAGACAGTATCCAAATCAAAAAAA
AAAAAATCAGAAAAGAAAAGGGAGACATAACTAGGGAAACTGAAGAAATC
AAAAAAATCATCAGATCCTACTACAAAAGCCTATATTCAATGAAACTGGA
AAATCTGAATGAAATGGACAACTTTCTAGAGAGGTACCAGGTACCAAAGT
TAAATCAGGGTCAGATTAATGATCTAAACAGACCCATAACCTCTAGAGAA
ATAGAAACCATCACTAATAGTCTCCCCNCCCNNNTAAAATATAATATAAT
ANTNTNNNNTACATATACCCCTTCCTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_p13.b1 MSMg01no462_p13.b1 CHROMAT_FILE:
MSMg01no462_p13.b1 PHD_FILE: MSMg01no462_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:10 2005
         (311 letters)



>mm_chr2_40700739_40701449
          Length = 711

 Score =  557 bits (288), Expect = e-163
 Identities = 305/311 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaactttggntctcaatggtactttctggtactaaatttggcttttattatggaatcagg 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaactttggttctcaatggtactttctggtactaaatttggcttttattatggaatcagg 260

                                                                       
Query: 61  atgtttgcttatgccttgtcattgctgaccttcctttctggatactttagtcatcttatt 120
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 261 atgtttgcttatgccttgtcattgctgaggttcctttctggatactttagtcatcttatt 320

                                                                       
Query: 121 ttactaacaagcatctggcaaaagacaaaaaccctcaaatcctgtgaaaggaatttccaa 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttactaacaagcatctgacaaaagacaaaaaccctcaaatcctgtgaaaggaatttccaa 380

                                                                       
Query: 181 gcaagatttacaagtttttgcggactcaggagatagtttggaaatatcaaggtatgtaaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 gcaagatttacaagtttttgcggactcaggagatagtttggaaatatcaaagtatgtaaa 440

                                                                       
Query: 241 aatattacatagtaggctttggaaataagttggttttatctatctacctatcatccatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatattacatagtaggctttggaaataagttggttttatctatctacctatcatccatcc 500

                      
Query: 301 atctatctatc 311
           ||| |||||||
Sbjct: 501 atccatctatc 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)